RNA id: NM_001124244.1


Basic Information

Item Value
RNA id NM_001124244.1
length 788
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC100135859
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22221848 ~ 22225274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGAAGcTGAATATCTCGTTTCCTGCCACTGGCTGTCAGAAGCTCATTGAAGTTGATGATGAGCGCAAGCTGCGAACCTTCTATGAGAAGCGTATGGCAACAGAGGTGGCTGCTGATCCCCTGGGAGATGAGTGGAAGGGCTACATGGTGCGCATCAGCGGAGGTAATGACAAGCAGGGCTTCCCCATGAAGCAGGGTGTGCTGACCCACGGCCGTGTGCGCTTGTTGCTTGCCAAGGGCCATTCCTGTTACCGCCCCCGTAGGACAGGAGAGCGCAAACGCAAGTCTGTCCGTGGCTGCATCGTTGATGCCAACCTCAGTGTGCTGAACTTGGTTATCATCAAGAAAGGCGAGAAGGACATCCCCGGCCTGACCGACAGCACCGTGCCCCGCCGCTTGGGACCCAAGAGGGCCAGCAAGATCCGCAAGCTCTTCAACCTGGCCAAGGAGGACGATGTCAGGCAGTACGTTGTGAGGAGACCACTGACTAAAGAAGGTAAGAAGCCCAGGACCAAGGCTCCCAGGATTCAGAGGCTGGTGACACCCCGTGTGCTCCAGCACAAGCGCCGCCGCATTGCCCTGAAAAAACAGCGCACCCAGAAGAACAAGGAGGAGGCTTCCGAATACGCCAAGCTGCTGGCCAAGAGGATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATCGCCAAAAGGCGCCGTCTTTCCTCCCTTAGGGCCTCCACATCCAAATCTGAGTCCAGCCAGAAGTGAAATGTGGAATTgaattaaaaaatgttttgctgaaA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02991 RP-S6e, RPS6; small subunit ribosomal protein S6e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1834848 lncRNA downstream 3009 22218231 ~ 22218839 (-) True G1602656
TU1834817 lncRNA downstream 5983 22210552 ~ 22215865 (-) True G1602626
TU1834847 lncRNA downstream 29710 22191926 ~ 22192138 (-) True G1602655
TU1834779 lncRNA downstream 52137 22167627 ~ 22169711 (-) True LOC110497506
TU1834768 lncRNA downstream 97011 22122501 ~ 22124837 (-) False LOC110497506
TU1834863 lncRNA upstream 18358 22243632 ~ 22247511 (-) True G1602671
TU1834879 lncRNA upstream 41128 22266402 ~ 22266823 (-) True G1602687
TU1834885 lncRNA upstream 53988 22279262 ~ 22279604 (-) True G1602693
TU1834892 lncRNA upstream 64107 22289381 ~ 22293391 (-) True G1602700
TU1834916 lncRNA upstream 97089 22322363 ~ 22324915 (-) True G1602714
LOC110498675 mRNA downstream 35061 22155880 ~ 22186787 (-) True LOC110498675
XM_021573642.2 mRNA downstream 66026 22123424 ~ 22155822 (-) False LOC110497506
XM_036954453.1 mRNA downstream 66026 22123424 ~ 22155822 (-) False LOC110497506
XR_005037679.1 mRNA downstream 66026 22123424 ~ 22155822 (-) False LOC110497506
XM_036954451.1 mRNA downstream 66319 22123424 ~ 22155529 (-) False LOC110497506
XM_021573632.2 mRNA upstream 105803 22331077 ~ 22358393 (-) True LOC110497500
XM_021573628.2 mRNA upstream 262438 22487712 ~ 22497823 (-) True LOC110497496
XM_021573627.2 mRNA upstream 296718 22521992 ~ 22566059 (-) False LOC110497495
XM_036954462.1 mRNA upstream 296718 22521992 ~ 22586452 (-) False LOC110497495
XM_021573626.2 mRNA upstream 296718 22521992 ~ 22587011 (-) True LOC110497495
TU1832025 other downstream 2085287 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2113057 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 2579845 19638760 ~ 19642003 (-) False G1599758
TU1831722 other downstream 2584821 19636018 ~ 19637027 (-) False G1599760
TU1834958 other upstream 178242 22403516 ~ 22403837 (-) True G1602753
TU1834968 other upstream 190144 22415418 ~ 22416043 (-) True G1602763
TU1836272 other upstream 916542 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1748516 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1965424 24190698 ~ 24206438 (-) True gpr137c

Expression Profile