RNA id: XM_021573632.2


Basic Information

Item Value
RNA id XM_021573632.2
length 7599
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110497500
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22331077 ~ 22358393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgcgCAATTGATTGTGCACCGCTACGTTATCAAAGAGAGTAGCATCAAGTAGATTAGCATGTAGACCTAAAATCGCACTCTGTGACGAAGGTTTGACCCCAGCCTTTGCCAATGTAGCTGACATGTCATCCGAAATGTCACTCGAGCGTTAAACAGACAACTGTCGTCGAGTGAAGCGGTGAAGAGCAACAACTCCATGTGCTGATTACGGACGTCGGAATATACAACAGAGAGTGCACTGGGGATTTCGAGGGCGACTAGACggaccccctctcactctccctccctcattccagTCTCTCCCTCGCGCAAAGTTTTCCGTCCTGTGACAGGATAACATCGCTAACAAAGAGCATTTCTGGCAGTAAGAAACCGCACAAATGGAAGCAGTTGAGAAAACTCTCACTTACCGAGACGACACCGGACCTTATAGAAAGCTGCTTCCTGGAAATGAAGACAAAAACCAGTGCAACACTAAGGCAAAAAGTGACGAATCCAATTATGTTGATTTGGATGATTTACTTGATATGAATTCAGAGTGCACAAAAACTGTTAAAGTGACTTTCACCGGTGACGGTAACCAGCTTGCAGTTTTCAAATGCAACAGTGATACGTCCGGAGAGAGGAGCCCCGGGGTTCGCGAGATTGATGACAATGTGGATCAAATCTATGAGGAAACATCGAAGGACAGGTGGGCAGATAGGCCTGTCTTGGAAGACCCCCCCATGGACACTTATTTGACAGAATTTAACAGAAATGTGGACTTGGGGAATGACAATACGACAGAATCCCAGAGCGAAATTGTGCCTCGTGATTATAATGTCCCTAGCGAGTGTGAGGAGTTACAATACACAGACATGTATTTGAACAGTAAAACCGAATCGGACGACGGTGAGAGCGTAGTATTGTCAGACCATTGTGCGCCTGATACGGTGATGGACGAATCGCACTACATTACAACGCACGAAAtccaactgacagagcttgaccaTGATGTCGATTATGATTTTGGACGGGGAAACTGTTGGGATATTGAGGACGATAATCTGGTTTATTCATTTGTGGATTATGCCTCTTTTGAAAGCGATGAAACAACGGAGGAAACTTTGATAGGCCTAGTGGATGGTAGGAGCCAGGCGAAAGTAAAAAGCAGCAAGGCGCAATGTAATGTGCACCAACGTGTTTCTGGTTGTGCAGTTGTCAGCACTGAGAGTGAGTTTTGTGACTCTGACAAATGCCCCAGCTCAGATGAAAGCAtttgtaaaaaacaaaacagttGTGGGAATTCGGCGGGGCAAATTCACCTGTCAATCAAGACGTCATCAAGAGCAATAAACGACTCTAACAATATCATTGAGAATGAAAACATTTGTTATAATACCAAGCACATGGGAAACAGGAGTCACTTCTTTTTTACAAGCACTGACGCCAGAGCTGAAGCCTTGTGCGATAGATCCCAATATTTTATCCCAGCCCCGGGACGTCAACACTTTGCAACTAAATTAAGAGGGAAAGATGTTAACGAATATTCCAGCGGTGCGTCAAGTTCGATTAGTGAACTGGACGACGCTGATAAAGAAGTGCGTAATTTAACCGCCAAATCATTTAGGAGTTTAGCATGTCCCTATTTCGATGCTATAAATTTGAGCACTTCAAGTGAGTCTTCAATGTCAGAAAATGGGCTTGGCTTAAACAAGTGGTCAGCTTTCGTTGACCTTAAATATGGTAATATGTCACATGGCAGAGAGCAAAATCTAATCGCCCATAAGAGTGCAACTGCAACTTTTGAAATGAACAAGAACGCAGACTATAAGAGTATACATGGTATTGCCATAAGCAACAAGAAAGTACCCCAAACCAAGATGTTTTCTTTGAATACAAAAATATCTAGTCCACAACATGCATCTTCCTCTACCCAAAACGTAGAGCTTACAGGCCCATTTGAACCAGGCAGTGAGGTTATCACTTTGACAAAGACATTGAATTTTCGCTGTAATGTTGAAGCGGGGTCACCTGAACCCGGGAAGTCTCCCAAATATTCAGAAAATGTGTCAGGAGCACGTTCCATGGATGAAGTTACCGGCACCTTGCCAGCCAAGCCAGGATATGAAGTGAGCTACCAACACAGTGACGCGGGTGATAGCATGGAAGGCACACATAAGAATGCAAGTTTCGCATCAAGTCTCTTAAAAAATGTAATTTCCAAAAAAATGCAATTTGAACAGGAGCGtaagatggagaggggggagatacgGGACACGCATCCCACGCACTCCCCATGCTTTCAATGCAAGGATAATGATGGGATaagggagagggatacagagagaggcgTGCATAGTCAATCCACAAAATCGGGTTCGGGATACACAAGCAATTATTCGGATGAACAAGGGGCTGTGGACAGTAGACCTAATTCTTGTGACCCCAAGGAAGAGCGTACAAGAACATTAGCAAGCTTTCAGCCCATAAATGAGGCAAGACTAGATTCTCAAAGGGATGCATGCGAGCCGACAAGAGGATCCCTGAGCCATAGCCAAAACAGCGCATTCAAATCATGGAGGGATGGTGAGCCAGAGCCCCAAGATGAACATGAAATTCGTACCGTTTTAGATGGGACACACTCCACAACAGATAACACGGGGGAAAGGGAGTTAGACACGAGGTCTGTAAGTAGCAAGCTAACTAAATTGTCACACTTGTTTGTTCCAAGTTCCCATCGTCTCCCTAAAGATACGGAATTGAAAGAACAGGTGTCAGACAGTACTTTACTCGGTGCGCAAAAAGAgcaacagggggacagagagagaaagttaaGACCTGACAACAATGCAGGAATCGTGAAAGGGTCAAAGGCACCCGAGATAAAAATACGCCTGAGGAGCGTAAAAGAAAACAAATGCAATCCGCTAAATATTGACAACTTGTTAACCCCTAATATAAGTTATCCAATAAAGTCAGCAGGTGACTCCAAATGTCAGGTGCTGCCAGCGTCAGACAGAGTGCCACACTTTACGGTTAGGGATATAAGAGACAATAAGTGCAAGTTTCAGACGCCAATTCATCAGGTAAGAGACGTACGTAAATTGGTCAAGAGTTCATATCGTTTAGTCTCAGTGGATAACAGCGAGAGTAAAGGCGCAGTCGCCCCTGCAACTGCCTCATTACGCGAAGATAATAAAGCTTCTAAGAAACTACCCGGTAAAAAATCGCCTCCCTCTTCAATTGTAATAAAATGTCagtctgtaaatacaaatagcagtACTAAACAAGGTGTGCTTGTAACCGAGGCTCCAAAGCAGAGACAAATTGAGAACGATAGGTCATCCCCAAAACCATCTCCAGACTGTGCCAAAAATGAACCCACGTCGCTGCACAGGGCGACGGGCAGACCTCCAATTGGCTTCGCTAAACACCCCAACACAGATCAGTCCGAGGCTAAACAGAAGCAGGAAAAAATGGTCGAGGCAGGTGAACGCAAACCGGAGTCGAAAATACCAAAACAGGTGGCGTTAGAGAAACTAAAGGCGGCCGTTAAAACAATGGAACAGCTTTATGTTTTTGACAGAAATGAATGGAAGCGCAAGAGCCAGGCTCCCTGGCCTATTACAGACAGTCATGTTCTGCCACTCATTGCTAAAGAGGAGCATGGTGGCCCGGAGGAGCTAGGTTCAGCAGGTGACAGAGAGAGGCTTAttacagagacaaacacagacaggTTGCCAGAAACATGCAACATTCAAGAAGAGAAAGGTTGTCTAAGAATAATCCATGTCCCATTCACAAAGAACACATTTAAAACCCAGTCACAACAAAGTAAAATGTTTAGCAACAAAAGTGTGTTTCATTTGGGGAACAGCATTAAGACAGCTGTCAGTAGCAGCAGCTTTGCTAGTAGGAATGGGCCACAACCCTGTTCTCCATCACATGCAACCTCTATGGTGAAAAGCATTAGCACTAAGACCCCGAAAGCTCCACTCTCATTGAAAATATGCCCCTCAAAACGAGCGCTGGAGGACAGGGGAAGGTTCAAAAGCAGCTCCACCACAGAGACAACACCACAGCCCATCAAATCTGGCAACCCAGACTCTGAAAACTACTTAACAATACCTGTAGAAGGCCGGTGTGTCGGTCAAGTGAAACTGCCCATTCAAGAGCAGATATTCCCAAGCAGCCCTGCTGCCAGTCAACCTGGCATCACCGACACCAAGAGATCCGAGCATAATTCTATCCAGTTTCTCAAACGGTCCCCTGTTGTCATGGAGACGCGGCCCCCGGATACCCCCACCATCCCCACTACCGCCACCATCTACCACCACTCTCTACCAGTGGTCAAGCAAGGAGCCCCCCAGCCGCAGGTGTTCTGCTTCTCCCCGTCCATTGCCCCCTTGCCCACAACCCCTTCGGGGGGAAACCCCTTCCAGCCTACCCAGAGGAAGATGCTCTTTGATCCCACCACCGGACAGTACTACCTGGTGGACACTCCGAGTGAGCCAGTCACCCGGCGTCTCTTCGACCCTGAGACGGGCCAGTATGTGGACGTGCCCATGCCTATGCCTATGCCACAGCTGCAGCCAGTGACCCCCATGTCGGTGTCCCCCCTGGCGCTGAACACGGGAGGGGTGTACTCACCCAACTACATGATCTACCCGGGGTTCCTCTCACCCATACTTCCTGCACAGACAGTGATGACACCCCAGGTCGCATCCTGCGTGGCATCCCAATTGGACGACGAGAGCGGGAATACTGCTCACAGGAAATACACCCTGGTGCGTGGGGGGGGACAGGAGGGTAACATGCCGGGGGCAGAGAGCCCCTACTACAGTGCTACTGGAGGGTCAGTGCCAGCATCAGTGCCCGTCACCTTGGGCCACCACGTCACCACCCGGGGGAGTGCGGCCTTGTCAGAAGGGAAACCACCGGTCATCAGCATCACGTCCCAGCAACGCCCGAGAATCATTGCACCACCCTCCTTCGATGGGACGACCATGAGCTTTGTGGTGGAGCATCGGTAACCACCAAGGGAATATACACAGAGTGCTTCTTGAGGAGCCTGTCCTGTGATAAGTAGATGTTTCATGGTAATCTTCTCACACCCTTCTTCGCACCCAGTCCACCAAATTCCACCTGAACCCACAATGTTTCCAAGCCCAACCACCTGCCACCATCACCGCCCCATCCAACCCTATCCTGCCGGTGGTCTTTGCAGCACGTCTGTATCTGTAAAGCTATGCTTCATGCCTACCACTTGTTTGTAAGGTAGCTAATTGCTTTGTAAAAGTGCTTTCAGATCTGTATTTAGATTACAGAACATTCCTTTTGTTCAAAAGCAATTGGATTCAGGCACTGCAATATTGTGATTCAAAAGGAAATAATGTAGACTGTTTTCCAATTAAGATTCTATAAAAGTTACAcacgtgcgcgtgtgcgtgcgcgaGTGTGATTGTCCCAACAAAAATATTTAATCAGTAGACGTACAATAGACCCTATTACACCATACATTGGAAAACATTTGCATTTGCAGGGGGGTTAATTCTAATTCAATGCATCATATAGATTGAAAATCCAATCCAGGAATTATTTTTAATGAGGGAGTTTTTTATTCTCTAAACTGAGGCGTTTCCTTTTTCTCTTGGCTCTTTGGTGACCTGGAGAAGTAGTAACAAGATCACACTTCTAGCTGCACCCTTTGTTTCCTCCTTTTGCAGCTAATAGCCACACAGTTATTGGATTGTATGATTTGATGTGCTTTTATATGACATTCGTATGGCACTCTCCTTGTATGCAAATACTATGATGATAGACTTAAGAGAAACACACTAAGTGTGTTGCTGAGAAAAGCTGGAGCCCTGGGACCTGCCACATATTTAGTGGTTGTTTAGAGTCAGAGGTTGGCTATATAGTATATTTGGGGCAAATGTTTCCCAAGTTGCTTTACTGTATGCTTAGGGGAGCCAGCTATAGTTGAGACATTTTATGGGATAACCTCCTCTATAGGTTTTGGCTAACTTTTACACTCACGTGTAAAAGGACAATgacatgggttagggttagtgtgtgtatgtactgtatgtgtttagtAATTGTGAGGTATTATGCattatgtgaacagacaacaggctAGCGTGTTACAGAAGAACTCAGATAAATTAGAAATGCATCAGTCGATCATTCATTCATACATAAGCATTTTTTATTTAAGATTTCACAATGTTTTGGGTGGTTACCTACTTGtagacaggaacaggaacaggaacggGAAAGGAATTGTCTTTCCCTTTGATCCTTTTCTTAAATGGCAATTGTTTAAAAAATAGTGGGTACTGCTATTTCATGCCCATTCTGAATACCAATTGTAAAAAATGCTTATATTCATATTCAATCAGGACCAGTGTTGGGGTGAATTCAAATTTGAATTCAGTCATTTCAGGTTATGATTTGAAATCAAATTAATTCATTGAAAATTGCTCATTATTAAAACAAATTGGTATGTGGACTTTTACATTTATTAATACAATTTCAGCTCACACCAGGGATGAATGAGCTAACATGAAATTGACtccaaatttaaaaaaatatactaatCTCTTTCTTTCCTTTTGAACAATGTTGCAGTGCAACAATAGACACTCACGCTTAGAGCAATGGTGCTTTCTTcagttttcatttattttttaagttCCATGTTTGAATATGCATATTGTAGGTTGCTGTTTTTCTTGTTTTACACATTAGAAAATGCATTAAAAGGTATTTTCAGCTGCTGGTCAGTCTTTGAACCTgaaaaatatatttgagtttTCTGTCTGTGACAACGCACTGTATAAAAAAGTAACCTGTGAGTTGATTCCACTGTGGAAGAAAGTATAGTCACAGTACAACCCACTGGGCCATGGATCTATAACATTAAAAAAATGTTCACCTGTTACAAAAGGGTGGATTAAATTGACTAACGGTATTTCAGCTTTATCATGCAAACATTTGGATTCAAACGTCAAACATGATAACTTTCAAAATGTCAAACCAGAGAAGacaatttatttgtatttttattttacatatCATTTCTTGTGTTGTTGGTTTTTATGAAATGGTTCATATACTGTGGTATGTAAACTGAATTTCCTTCTTAAGGGTGTGTAATTGCTGTTGGGCACATTAGTGCACTTGGCAGGCTAGATACATTATTTTATTCACCAACCAAAAGCAGTGCATACTGTAACAGTTGAAGATTGGTTGATGATGTTTCTTGTCCTTCAAAAGGAAATTTGTTACGCATTAATCCTGATGAATTATTGAATAGTAGAATGAAGTCTAATTGAATCCTGACACAAAGtagcacattctactgaacaGTACATTCAcactacttacagtgccttcagaaagaatggACTTTTCCAAAatgtttgttgtgttacagcctgcatttaaaatagATTAATTTGAGGTTTTGTGTCACACACAATagctcataatgtcaaagtggaattatgtttttagaaatgttatttttttattttattattgtcAATTACAtggctcactctgtgtgcaataatagtgtttaacatgattgttTGAATGACTACAtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1834916 lncRNA downstream 6162 22322363 ~ 22324915 (-) True G1602714
TU1834892 lncRNA downstream 37686 22289381 ~ 22293391 (-) True G1602700
TU1834885 lncRNA downstream 51473 22279262 ~ 22279604 (-) True G1602693
TU1834879 lncRNA downstream 64254 22266402 ~ 22266823 (-) True G1602687
TU1834863 lncRNA downstream 83566 22243632 ~ 22247511 (-) True G1602671
TU1834937 lncRNA upstream 7430 22365823 ~ 22367574 (-) True G1602732
TU1834959 lncRNA upstream 45489 22403882 ~ 22404083 (-) True G1602754
TU1834962 lncRNA upstream 49671 22408064 ~ 22408293 (-) True G1602757
TU1834969 lncRNA upstream 58789 22417182 ~ 22417496 (-) True G1602764
TU1834977 lncRNA upstream 65263 22423656 ~ 22424798 (-) True G1602769
NM_001124244.1 mRNA downstream 105803 22221848 ~ 22225274 (-) True LOC100135859
LOC110498675 mRNA downstream 144290 22155880 ~ 22186787 (-) True LOC110498675
XM_021573642.2 mRNA downstream 175255 22123424 ~ 22155822 (-) False LOC110497506
XM_036954453.1 mRNA downstream 175255 22123424 ~ 22155822 (-) False LOC110497506
XR_005037679.1 mRNA downstream 175255 22123424 ~ 22155822 (-) False LOC110497506
XM_021573628.2 mRNA upstream 129319 22487712 ~ 22497823 (-) True LOC110497496
XM_021573627.2 mRNA upstream 163599 22521992 ~ 22566059 (-) False LOC110497495
XM_036954462.1 mRNA upstream 163599 22521992 ~ 22586452 (-) False LOC110497495
XM_021573626.2 mRNA upstream 163599 22521992 ~ 22587011 (-) True LOC110497495
XM_021573621.2 mRNA upstream 329923 22688316 ~ 22694024 (-) True LOC110497491
TU1832025 other downstream 2194516 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2222286 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 2689074 19638760 ~ 19642003 (-) False G1599758
TU1831722 other downstream 2694050 19636018 ~ 19637027 (-) False G1599760
TU1834958 other upstream 45123 22403516 ~ 22403837 (-) True G1602753
TU1834968 other upstream 57025 22415418 ~ 22416043 (-) True G1602763
TU1836272 other upstream 783423 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1615397 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1832305 24190698 ~ 24206438 (-) True gpr137c

Expression Profile