RNA id: XM_036955489.1



Basic Information


Item Value
RNA id XM_036955489.1
length 1225
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC118941547
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22706176 ~ 22721341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtCTTCCAGATCCATGGACTTCCGGTCAACATGGTCTCCGATCgaggtcctcagttctcgtcctggttctggaaggcattctaCACCCCCATCTACACCCAAGTCGGAGCGAGCTAATCATGACCTGGAGACGGCTCTTCATTGTCTTGTCTCCGTCAACCCCACTACCTGGAGCCAGAAACTTGTGTGGGTGGAATACGCCCATAACACCCTTCCCTGCTTGGCCACTGGTCTCTCGCCCTTCGAATGTTCCTTGGGATATCAGCCCCCGCTCGTCCCTGAGAAAGAGGAAGAAGTCAGAATATCCTCTGCCCAGAAGTTTGTCCGCCACTGTCGACGTACCTGGAAAAGAGCCTGGGCTGCTCTTCTCAAGACCACATCCAGGTATCAACGACAGGCGGATCGCCACCGGACCCCTACTACACGCTATCTGCTCGGGCATAGGGTCAAGCATCAACTCCAAGAGCTCCAGCGACATCCGCACGGCGTCATTGGCAGAGGAGCAGATAATGATGAAGATGGCTATCACCAGAGCCAAGATGAAAGCGAGGAAGAGTCAGGGAGGCCACCGGGTCAAAGATACCAATTCTTAATCAGAGAGGTAcgtggggctgccttaatcgacatccacatcatCGGTGCCCGGGGGGcatgtaacggctgttggaaggagaggaccaaaacgcagcgtgTCGCCTGGGTTGTGGCTTGGCCATCGTCTGCCCTAGTGGAGGCAGTACCAGGAAGAACTACTCCTTTAGCAACGACGAGGTGCGGCAGACCGACTGGGAGAATCAGAGGCTGCTGCGCCAGTTGTCGCGCCCCTCGACCCACTCGCGACCAGGCAGCACTAGTAGCTCCCGTAGGAGATCCAATGGAGGATGAGGGAGTCGGCCCCCTGTCCGCCTCTACCACAGTGCCCTCAACAGACAGCGTGAGCAGCAGCGCATCGAGAAGGAGAACCTGCTGTGTGTTCTTCTCTTTTTGTGTGTTTAACTTATCTTTTGTCATTGGGTGTTTGGCTTTATTGTTTCAACGTTACAATGCGTTTATTGggatttttgtttatttcaaGCTCAAATGAGTCAAGACTTGCTTCAAAGTGGATATACAGTGTCGTATTTGCCccttttctgattttctctatttttgcagctaaaggtggcacaaccagtttttgagtgtaagggggcaattactttttcacacagggacATTGGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1835126 lncRNA downstream 48012 22657936 ~ 22658164 (-) True G1602898
TU1835118 lncRNA downstream 52139 22653539 ~ 22654037 (-) True G1602890
TU1835080 lncRNA downstream 67844 22596686 ~ 22638332 (-) True G1602852
TU1835050 lncRNA downstream 135698 22517404 ~ 22570478 (-) True G1602824
TU1835035 lncRNA downstream 188877 22509853 ~ 22517299 (-) True G1602814
TU1835439 lncRNA upstream 2985 22724326 ~ 22731110 (-) True G1603177
TU1835534 lncRNA upstream 116374 22837715 ~ 22838104 (-) True G1603262
TU1836260 lncRNA upstream 345078 23066419 ~ 23066719 (-) True G1603934
TU1836371 lncRNA upstream 499867 23221208 ~ 23221477 (-) True G1604032
TU1836373 lncRNA upstream 501529 23222870 ~ 23302771 (-) True G1604034
XM_021573621.2 mRNA downstream 12152 22688316 ~ 22694024 (-) True LOC110497491
XM_021573626.2 mRNA downstream 119165 22521992 ~ 22587011 (-) True LOC110497495
XM_036954462.1 mRNA downstream 119724 22521992 ~ 22586452 (-) False LOC110497495
XM_021573627.2 mRNA downstream 140117 22521992 ~ 22566059 (-) False LOC110497495
XM_021573628.2 mRNA downstream 208353 22487712 ~ 22497823 (-) True LOC110497496
XM_036954463.1 mRNA upstream 128374 22849715 ~ 22907220 (-) True LOC110497487
XM_021573615.2 mRNA upstream 189123 22910464 ~ 22922275 (-) False LOC110497486
XM_021573614.2 mRNA upstream 189124 22910465 ~ 22922273 (-) True LOC110497486
XM_021573613.2 mRNA upstream 215721 22937062 ~ 22949114 (-) True LOC110497484
XM_021575223.2 mRNA upstream 289520 23010861 ~ 23013816 (-) True LOC110498560
TU1834968 other downstream 290133 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 302339 22403516 ~ 22403837 (-) True G1602753
TU1832025 other downstream 2569615 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2597385 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 3064173 19638760 ~ 19642003 (-) False G1599758
TU1836272 other upstream 420475 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1252449 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1469357 24190698 ~ 24206438 (-) True gpr137c
TU1837685 other upstream 1831197 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 2089379 24810720 ~ 24844137 (-) True LOC110497546

Expression Profile