RNA id: XM_021573615.2


Basic Information

Item Value
RNA id XM_021573615.2
length 1592
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110497486
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22910464 ~ 22922275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgatagccTCCCCACGTCCCCATTTCTTTGTGAGTTGTTTTGAGTGTTTGGCCTGCTAAATGTAGCCTATTGATGTAAGCTACATTCCATTgacaacagacacagagacacaccccCCAACAGATTGGCTTCAGTGGCTGGGAGTGTGAAGTTCAGGTTGGATCGAAACTACCTAGGTCGACCCCTGAGCCTCCTTGCCTTCCAGTCAAGGATCCAGTTTGTTTGAAAGACaagacagacaggacacacacacaggtatggaCAAGTCCCATCAAGGTGTGCAGTTGTGATTCCGAGGGGACACCATGGACCTGGGGATAAAGGTTAGCACTCCCAAAGACATCATGCTGGAGGAGCTGTCACTGCAATCCAACAGAGGCTCTCGTCTTTTCAAAATGCGCCAGCGAAGATCAGAGAAATACACGTTTGAAAGTATCCAAAATGAGGCAAACGTGCAGCTGAGTAGGGATCTGCTAGCTGAGAATGTAGACAGTGCCGAAAACAAAGAGGGATCAAAAACACTTCCTTACACACCCGCCCCAGGAAACCCTTCAAATCCAGAAAGCATTGCACCAGGATATGGAGGCCCCTTGAAGGATGTCCCTGCAGAGACGTTCAACTCTACAGCTATACCCAAGTCTATACTCCCTTGGGAGCAAGCTATCATTAACGACCCCAACCTGGCCGAGACCCTCAATATCAGGATGCCTGTCCCTGAACCCAGACCAGAGGCTCCTGAATACAAGAGCTTTAACAGGGTGGCCACACCGTTTGGTGGTTTCGACAAAGCCCCCCAGAGCAGTGGGATCACGTTCAAGCTCCCCGAGATCGACCTGAACCTCCCCAACTACTCTGAGCTCCAGGACCCAGGGGTGAAACGGCCCACCTTCAACAGGGTCGCCCAGGGATGGATAACCGACGGCATCCCACTGATCCTGCCCACCGTGCCTCTGGAACCTATGCCCATCCCTGAGTCCGATGACCTCTAGATGACCTTTAAATGACCCATAAATACCTGGAAAGACAAGAGAGCACCGGTCCAACAAGATCCACTGTTGGCACCTCTAACCTTACTGCCTGATCTGCGATATAGGGGTCGGAGCTGAAGCCTAAATCATGATTTTTGAATATGTGCAACCGACGACGAACTGATGGTTTCAAATAGGGGTTCCCTGCTGTCCTGTTTCAATTCTGTGCCATTTGCATGAGTAATGATACTGATGGTTAGTTTTGCATTGTGTATTCAGAGAATAACATGTAAATAAATAGCACACATGACAGAAATGTTATTGAAATGTCTAAGAGAAAAAATATGAGTAATACATTGAAACTCCAATACATCTTTTGGCTTATATTGGACATCAGATATAAAAGTATCTTTGTCTTTAATTATGTAGACATGTTGCCTATTAATCTTTTAGAATGGGCTTATCGATgtgcaaataaaaatgtatatctCTTTTCATGACATTGTATAATTAATTGGCTTTTGTAAATCAATGTGTGGTTTGGATATGTGGAACAAATGAACTTGTTATGTACAGTACTTTGACTTGAAACACAATTCCTGCAAATTAAAAGAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1835534 lncRNA downstream 72360 22837715 ~ 22838104 (-) True G1603262
TU1835414 lncRNA downstream 175633 22691584 ~ 22734831 (-) True G1603153
TU1835439 lncRNA downstream 179354 22724326 ~ 22731110 (-) True G1603177
TU1835126 lncRNA downstream 252300 22657936 ~ 22658164 (-) True G1602898
TU1835118 lncRNA downstream 256427 22653539 ~ 22654037 (-) True G1602890
TU1836260 lncRNA upstream 144144 23066419 ~ 23066719 (-) True G1603934
TU1836371 lncRNA upstream 298933 23221208 ~ 23221477 (-) True G1604032
TU1836373 lncRNA upstream 300595 23222870 ~ 23302771 (-) True G1604034
TU1836429 lncRNA upstream 380252 23302527 ~ 23360584 (-) True G1604090
TU1836453 lncRNA upstream 442945 23365220 ~ 23370434 (-) False G1604113
XM_036954463.1 mRNA downstream 3244 22849715 ~ 22907220 (-) True LOC110497487
XM_036955489.1 mRNA downstream 189123 22706176 ~ 22721341 (-) True LOC118941547
XM_021573621.2 mRNA downstream 216440 22688316 ~ 22694024 (-) True LOC110497491
XM_021573626.2 mRNA downstream 323453 22521992 ~ 22587011 (-) True LOC110497495
XM_036954462.1 mRNA downstream 324012 22521992 ~ 22586452 (-) False LOC110497495
XM_021573613.2 mRNA upstream 14787 22937062 ~ 22949114 (-) True LOC110497484
XM_021575223.2 mRNA upstream 88586 23010861 ~ 23013816 (-) True LOC110498560
XM_021575318.2 mRNA upstream 106969 23029244 ~ 23056148 (-) True LOC110498673
XM_036953811.1 mRNA upstream 157090 23079365 ~ 23080354 (-) True LOC118941356
XM_021573610.2 mRNA upstream 199233 23121508 ~ 23168992 (-) False LOC110497482
TU1834968 other downstream 494421 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 506627 22403516 ~ 22403837 (-) True G1602753
TU1832025 other downstream 2773903 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2801673 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 3268461 19638760 ~ 19642003 (-) False G1599758
TU1836272 other upstream 219541 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1051515 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1268423 24190698 ~ 24206438 (-) True gpr137c
TU1837685 other upstream 1630263 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 1888445 24810720 ~ 24844137 (-) True LOC110497546

Expression Profile