RNA id: XM_036954465.1


Basic Information

Item Value
RNA id XM_036954465.1
length 6867
RNA type mRNA
GC content 0.56
exon number 23
gene id LOC110497482
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 23121508 ~ 23168994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTAAGCTCGAGCAGCCAATTCCTGTCCAGTGGCCATATTGAAATCTCAAGTCTATCAGGACTCTGAAGGTACTGGGTTAGCTGTCTAACTGGAAGTCTTTCAAATATCGTATTTTTATAACAGAGGGATTTGAGCCAGACATTCCACCTGAGACTCTGCCTGTTACTGAACGGCAAGTTGTCTCTGACTTTTGTGGGAAAATGAGTCCAACCGATGCTAAACGAGGAGCTAAACGCAGGAAGAACAAGCGGGGCGGTGGCAGCAGTAGCACTGTCTGCAGTACCAGTGGCAAGGCCGGGGTTTCAGCCACGGCCCTGAGTCCTCAAGCCACGGCAACACCCGTGTCTACCATGGGCTTTCTGACACCAGGGAGCTCTGGAAATGGGAACATGGTCTCTATAACAGGCCTGAACGGAGAGGTCCCTATGAACGGTAACGTTACACCACAATTTTCGGAGGGGCCGGTGAATTCCGACTTCTCTGGAGTCCTTCAGACCCCGTTCACATTTGGCCTGAGTCAGAGGGCCCCATACTCCACTACCGGTGACCGCTGCCTCCTGTGCCGGAGTGAGCGCAAGCCAGACAGCACCCTCCATCCTGACACGGGGCTCCCCGGGGCAGGGCAGAATGGTATGGCACAGTCCCCCAGCGCACTGCATCTGCCCCTGTGGGTGTGCTCTGACTGCCGGCGCACGGTAGAGAAGGAGGACCGCCACTCCTCCCTGGAGCAGTCGCTGGTGAGCCAAGACTTCCTGTTGCAAATGCCTGTGGGTAATGGAGGCTTGGGCCAAGAGCTGCCTGCCACAGGGGGCAGACTGACCAATGGTGGCACACCCCCAACCCTCCCCACTCTCCCCGTCCCAGACCTCACCACCCCTATGACCGCTGACACCGTGTGCAGTTGTGAGGCCTGCAACGAGAGACGGGAGATTTCGGCCGAGTCAGAGCGCGAGTCCCAGCTGCTGCAGAACCACTGGTCGGAGGTACGCTACCTAGTGCGGTGCATCTACCGCCAGACAGGCACGCCGCTGGCCGACGACCACGACCATCCCCTGGACCGTGACAAGGAGGGCATGAAGGAGCTGGTGGACAGGCTGTGCGAGAAGGACCCTTATCAGCTCTACCAGAGGCTGGAGCAGCAGGCCCGCGAGTACGTCCTAGAAATGAAGGTGCGCCTGCTCAAGCACCTGTCGACCGGCTCTAAGGCTGCGGCAGCCGCCGCCCAGGGCCCCCCGCAGGCCCACCAGTTCATCTCGCTGCTCCTGGAGGAGTACAGCGCCCTCTGCCAGGCTGCGCGCACCATCAGCAGCTTCCTCCTCACCCTGGAGAATGAACACTTACAAAAGTTCCAGGTGACGTGGGAGCTGCACAACAAGCACCTTTTTGAGAACCTGGTGTTCTCTGAGCCCATCCTGCACAGCAGTTTACCTGCACTGGTTGCACAGCTGAGGCACGGCACGGCCTCCCTCAACTCGTACAACGAGGACATGTACAGGACCCTGCTGGAGAGTTACCAGCATCTGGAGCAGGAGATGGCCGCCGTGGCGGCTGAGTGGCAGGAGTGTGAGAAGAGGATTGACGACTACGTCGAcgaacagCTGCTTTTTAAGGTGGAGGGCCAGAATCTCACAAATCAACGGACAGAACCACATAAGTCTttaattagcaaaaatACTTTGAAAACAAAACAACGGATGCTGAAGGAAGACTGGGAGTTCTTTAAGCAGAGGAGGTTTATAGAAGAACAGTTAACCAGCAGTAAGAAGTCTTTAGCTGGTGACAGTAACTTTACAGACACGATGAGAATGCTCTCCTCTCGTCTCAGCATTCCAGACTGTCCAAATTGCAATTATCGAAGACGATGCAACTGCGACGACTGCAGCCTCTCCCACATCCTGACGTGCGGCATCATGGACTCGCCCATTGCCGAGGATCTCCACATCAAGCTGCCGCTTCAGGCCACGGAGCCCCCACAGCACCGGGACTACCTGGCCGAGGTGCACCCCCCCAGTCTCTCCTCCGGGGGCAGCTCAGCCTCCGCTTCGGTCTCCAGCTCGCCCATCACCATACAGCAGCACTCACGCCTCATCCTGCCAGAAGGGGTCGCCACCACCTTTGACGATGATGAAGTGCCTCCACTGTTGGGCAAGTTTGCGGACATCTACCCCATGGGCAGCTATGAGGACCCAGGGGTGGTGGCCGGCATGAACGGCCTGCACAGCGAGCTCAATGGTGGCGGAGAGAACATGGCGCTCAAAGTTGAGtctCCTGGAGGGAGCAGCAGTAGTTCGTCGGAGGGCGACGAGGAGGAGGCTGACGAGGAGAACTGCGGGGAGCCTCCGGGCCAGCGGAGGGAGCATTCCCCAGGGAAGAGCAACAGCCCTCCGCCCTACTACCAACAGCAACAGGTGGAACAGCACGCCTGTGAGTGCCACGTGTGCAACCAggacctgtcctcctccctcccccccctgggcccagctccccctctctccccccgccGGATCCACACGCCCCCCTCAGGCCACCACCATCAGTTCTTCACTGAGGGCAACAACCAGACCCCCAACCACTCtgccctccacctctacccccacatCCACGGCCACCTGCCCCTGCATAACCTCTCCCACCTGCCCCGGCCCCTGCTGCACCCAACACTCTACCCCAGCCCCCCCCTTTCACACAGCAAGcctctccccccttcccccaCATCGAGCCACACAGGGCCCAAGCAGCAGGCCTTCAGCCCCTCCCTACCGGACCACGTCTACCAGAACTGCTTTGGCGGAGGCGCTGGCGACTGGAACAGCTCGCTGCAGTGCCTCTCGCTCAAGTTCGAGAACATCTGCGACGCTGCCATGATGAAGAATTGGAACCCATCAGTGCTGCTGCAGGAGCCCCTGCCAGGGGACATGCTGGGATCACCCCACCACCCCGGCGTGCCCCTCCCCTCCTCGGGCTATGGGGACCATGCCCACACCGCCTCGGCCGAGACCACCCCCCTTCACCTCCCCCCCCCCTTGCCGTCAGAGCAGCAACAGCCCCTGCCCAGGGAGAGGAAGAACACTGCCAAGAAGAAGTGTCTCTACAATTTCCAAGATGCCTTCCTGGAGGCCAACAAAGTGGTGATGGCCACCTCTGCCTCCACCGCCTCAGTCTCCTGCACGGCAACCACTGTCCAGTCAAGTGACGTATTTCACAATATAGGTAAAGAGGACCATAGGCAACAACCTGGCCCTATCGCCCCTAGGAACAGCCCCACGGGcctggcctccctccctcccctctcatctGGCCCAGCCCTGCCACCTGCGCCTGGTAGCACCACCCAGCACCACTACCCCAGCATGGGCTCGCAGCCCTTCCTAACGACGGCCACCCCAGCCCCAGGCTTCATGGAGGCCCACCACCAGGGCATGTGCCTGTCCCCAGCCGAGCCGCCTGCCGCCGCCCCAGCCGACGGGGCCATTAGCGCCCCGCCCAGCGTGTGCAGTGACCCCGAGTGTGAGGGCCACCGTTGTGAGGGAAACGGGGCGTACGACCACCAGGGCTACGACGGGGAGGAGAGCCAGGACGAGGACAGCTGCTCGGAGCacagctcctccacctccacctccaccaacCAGAAGGAAGGGAAGTACTGCGACTGCTGCTACTGCGAGTTCTTTGGCCACGGCGGGCCCCCGGCGGCGCCCACCAGCCGCAACTACGCGGAAATGCGCGAGAAGCTGCGCCTCCGTCTGACCAAGCGGAAGGAGGAGCAGCCCAAGAGGGAGGAGCAGCCAGCCGTGGTGGAGCGTGACAGCGCCGCCGACGGTATGGAGGACCCCCGGCGGGTGGAGGACCCCCGGCGGGTGGAGGACCCCCGGCGGGTGGAGGACCCCCGGCGGGTGGAGGACCCCCGGCGGGTGGAGGACCATCGGCTGGTGGAGGACCTGCTGCAGTTCATCAACAGTGCCAGCGACAACAAGCCTGCCTCCAGCTCCAAGGCCGCCAAGCGGGCCCGCCACAAACAGAAGAAGatgGAGGAGAAGGTGCGTCTGGAGGTGGAGGTCCGCGAGCAGCAGGAGCGGCGGCgtcgggaggaggaggaggaggccctCCAACGGGAACTCCTCCGGCTGCAAGAGTTGCAGCACCTCCGCGCCGCCAAGAAGAAAAAGGATAAGGCCAAGGAGCTCGCCACCCCGCTCCCTGCCCCCGTACCTCAGAACAACCCCCAGCCCCTAAAACAGACGGCCCAGAACGTCCTGGAGAACCTCCGCAACGGCAAGAGCCAGCTCCTGCACAGCCTCATGCGCCTCCCTGGCCACAAGGATCCCCGAGTGGAGCACCGACCCCAGTCCCGGCCTCCCCTCTCACATCACAGCCCAAAGAGCAGCAGGGAGAAAGCCCTTACTCCGGCCCTTTTCACCCAAAATGCCCCCAACTCCCCAGCCCCCTTTCTTCTCAACGGCTCCTCCGCCGCACGCCAACCGACGGAGGCCAATGGCAAAGCCAGGCCAAAACAGCAGCAGCCAATCGGGCAATCCGCCAGCGAGACAATGATGGTCAAGAAAATGCCAGAGGCGACCACCACTAACGGtacaccacaactaccaccagACGTCAAAGTGACCCAACCCAGGCCTCCCGCAGAAGATCCGGCCGCCCCTCTGGCACCGGGACCCAGGAAGGAGGAAAGGAGCAACGGGAAAAGGCAGCACCATCAGCAGTCAGCGAGCCAGGcgaaagaggagaggagcggacCCTTGAAGGAGCCCTCCCCACCCCCTGCCTCACAGACGGAACAGCCCCAGCAGAACGGCAAACTCCTCAGTGCAGAATCCCCCCAGCCCAAGGCCAAGTCCAAAAAGAACAAGAAAAAGAAGGCTGACAAGATGAACAACTCAATAGATGACGTTTTCCTGCCCAAAGACATTGATCTGGACAGTACTGACATGGACGAGACTGAGAGGGAGGTGGAGTATTTCAAAAGgTTCTGCTTGGATTCCGCCAGGCAGACCCGACAACGGCTGTCCATCAACTGGTCCAACTTTAGCTTGAAGAAAGCAACGTTCGCCGCCCACTGATGGGACCTCCAGTAGGGCAAAGAAAAAGAGACTGTGGCAGGAAGCAATCAGcacccactccccccccccccccccccccccatgtaaaCTGCTATCACAGACCCCGTCATCGCCTAGCCCTGCTGTGCCCCACCCATGCTGCCTTGTTCCTTGTTGCTGTGCGGTTCTACCATGAACCCATCCTCTGGTCTGATCCTCAAGCAGAACTCTTGAGagaattgtttttttgttttgtttttttcaattAAATGACACAAGAAAAATGACAAAATGCTACTTTctacttgttttgtttttttattgctTGTTTGTGTGCTTTTAGTCTGAGGGGCATTTCTCATGACTTAAAGCCATGTTCTGAAATTCATTTTCTTTTTTGGGCTGATTCATAGTCAAAAGATGCTTACTATGTATGCTTTCTGAAATCAGACACACATGGAAAAAAATAGGAGAAAAATAGATATAGCTAATGAATTAAACTAAAGCCTCTCATTCAGTTACTGTGGCTTACTATCCCCTTGTTACCCACGATTCCTCGCACGGCATCTCATTCAGTTAACTGACAAGGGAATGGGCATGGTCTGCCGCACTCTCCCCTGCCCCAACAACCTTCACTTCACTGAGAGGAACTTGGCTTAATACTTGACAAcgttcttttttaatttttttcagTTCCATTTAACAAAACCGATAAGTAAAAGtgtacctgtttttttttttcccccctatTTTTGACTTGTATCCAGCTTGTATCACAGTACTTTCAGAATGAAATTGAAGAAAAGAACAATGCACACTATCAATCTGTTATAGAGTGTATATTGTATTAACACTGAAGCCAAACTGGCTACCTTTTAACATATTGTTAAGTAATATTAAAATCTTATCTTTCTTTTTTGAAAGATGGAATACAGTAGTATGGCAGGGTGTGTGTCTTGTCTGTGCTTATTTCCTTGGTGGTGCATCtttaatgcagtgtgtgtgtggggggggggggggggggtatatatttagtatagtttaatttaggagtattttttttatttgacattttcCCCAAATGTATAGGGGAGATCCATTCTCACCTTTGTACCTAGATGGACCTCCTCTGGTGGAGATTGTAAATCATGTCTATCCGCACATTATACACCGAATTAGATTCTAGAGAGCTGTAGGCTAAGAAGATACTGTCGCACTATCATCCCCTCGATACTGAGTGACTTTAACTGTTCACCATTACCGTCCTCCTCAAGGTGATTCATATTTACTGGTTGTGCTCTCAGGGAATGTTTGGCATTTAAAGACATCACTGATGCTTCTCCATTTAGGGTGTGCAGCCACACTAGACGACGGGACAGTGAGTCACGTTGAGTACTGTGTGCTTTCCTGGATCTCTACCACTGATTCTATCAATCGGTAGTGGAGCTATGACTGAGTCCTGTGGGACCCCATATTCTCGTAGCAGTGACTGAAAAGGAAAGGGGCTGACTTGACTATCATGACAGTCAGTGGTGAAATGTGAGTTATTTGCCCTCAGTCCTCTAGAAGAACATAAGTCGCTCTGGCTCTTCGATACTCACAGGACTCTGGGGAAAACGTGGTTGATGATGGTGTTATGAAATTGACGGTTTTCCCTTGGAGGGTAAATGGTTGATGTGTGTTTGTGGAATGACGTGGTAGTCTGGTAGAAATGAAGGTCCTAGATGCCCACATACCAAACTAATGTATGACACTGTTAGCGTTGTCTGACCCTCTTATTATATTCTTATTAAATTATATTTACTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1836260 lncRNA downstream 54789 23066419 ~ 23066719 (-) True G1603934
TU1835534 lncRNA downstream 283404 22837715 ~ 22838104 (-) True G1603262
TU1835414 lncRNA downstream 386677 22691584 ~ 22734831 (-) True G1603153
TU1835439 lncRNA downstream 390398 22724326 ~ 22731110 (-) True G1603177
TU1835126 lncRNA downstream 463344 22657936 ~ 22658164 (-) True G1602898
TU1836371 lncRNA upstream 52214 23221208 ~ 23221477 (-) True G1604032
TU1836373 lncRNA upstream 53876 23222870 ~ 23302771 (-) True G1604034
TU1836429 lncRNA upstream 133533 23302527 ~ 23360584 (-) True G1604090
TU1836453 lncRNA upstream 196226 23365220 ~ 23370434 (-) False G1604113
TU1836454 lncRNA upstream 196226 23365220 ~ 23370434 (-) True G1604113
XM_036953811.1 mRNA downstream 41154 23079365 ~ 23080354 (-) True LOC118941356
XM_021575318.2 mRNA downstream 65360 23029244 ~ 23056148 (-) True LOC110498673
XM_021575223.2 mRNA downstream 107692 23010861 ~ 23013816 (-) True LOC110498560
XM_021573613.2 mRNA downstream 172394 22937062 ~ 22949114 (-) True LOC110497484
XM_021573614.2 mRNA downstream 199235 22910465 ~ 22922273 (-) True LOC110497486
XM_021573132.2 mRNA upstream 150207 23319201 ~ 23327350 (-) False LOC100305151
XM_021573131.2 mRNA upstream 150207 23319201 ~ 23327356 (-) False LOC100305151
XM_021573129.2 mRNA upstream 150207 23319201 ~ 23327595 (-) False LOC100305151
NM_001165055.1 mRNA upstream 150213 23319207 ~ 23327439 (-) False LOC100305151
XM_021573130.2 mRNA upstream 150229 23319223 ~ 23327595 (-) True LOC100305151
TU1834968 other downstream 705465 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 717671 22403516 ~ 22403837 (-) True G1602753
TU1832025 other downstream 2984947 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 3012717 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 3479505 19638760 ~ 19642003 (-) False G1599758
TU1837328 other upstream 804796 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1021704 24190698 ~ 24206438 (-) True gpr137c
TU1837685 other upstream 1383544 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 1641726 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 1683475 24852469 ~ 24856721 (-) True sptlc2a

Expression Profile