RNA id: XM_036954474.1


Basic Information

Item Value
RNA id XM_036954474.1
length 7953
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110497537
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24058372 ~ 24159732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCCCTGACGTAATGCTTCGTGTTAATTATTCGCATGTGGAAAGCAAAGCCGAGTCTCTCCTCTGGTAAAACAAGAGGAGCCTAACTGCCGGAGGAAAAGTTAGTCAAGATGGCAAAACGCACAGATGCAGAGTGAAGGGGCACCGCTGCCCACAGTTTCAAACTTTGTTGCGCACCCGTCTTGCGATCCACACCACCGATGCAGTTGTGCAATGAAATATAAATGGGATCCCTGTGGAAAATGCCAACAAAAGTAATGCTGGTTTGACAGCGCAGAGTGCAGGAGGAAAGCCGACTCTCCTGTCTGAATGTTAACCCCTTGTGCAGATGTACCTAGGAGAGCACCTTGCCACCACTCCCCTCAAGCTGAAACTACAGTACACCTGCTTTTCTAAAAGCCTGGATGATGCTACGCCACTTAAACTGAGCACAACAGCTCAAATCCCTCCTGCTCAAAGTACATATTTCTGctccactcaacatcaacaacaaaaacagacCAAAAGAAGAGCACATCCAACACAAGCTTTGACCAAAGTTTAACCACTAGAGCAACAATTTAACTCAATTCTCTCGTGACACCAGGAAGGTCACTAACTAGTTTCCACGTTCGGCTTCGTGCCtgtgccccagaccatgatgttTCGCGACCAGGTGGGCATCCTGGGAAGCTGGTTTAAGGGGTGGAACGAGTGTGAGCAGACGGTGGCTCTGCTGTCGCTGCTGAAGCGGGTGTCGCAGACCCAGGCTCGTTTCCTGCAGCTGTGTCTGGAGCACAGCCTGGCTGATTGCACCGAGCTTCACGTGTTGGAGGGAGAGGCCAATAACCCAGTGGTGATCAGCCAGTGGCAGGGTGAGCCCAAGGAGCGCGTCATCTCCCTGGTCCTCACCCACCTGCCCCTGCTCAAGCCGGGCAACGTCGAAGCCAAGGGCGAGTACATGCGCCTCCTCCCCCGCATCCTGGCACACACCATCGAGCACGGCCGCCATCTGGAGGAGTCGCGCCAGCTCCTCTCCTACGCCCTCATCCACCCGGCCACTTCACTGGACGACCGAGCCGCCCTTGCCCTCTGGCTCAATCACCTGGAGGAACGCGCTGCTGCCCGGGCTGACTCGTTGGAACGACTGCCCCCCTCCCCAGCCTCGCACCATCAGACGCCCCCCTCAACGCTCTCCTCGTCGGGTTCCAGTTTGGGTTCCTCTGTGGGCCACCTGGGTCACCTGTATCACCACCAGCGCTACGGCTCAGACGATCGGCTCAACGGCTGGCAGGGGTCGAGGGACTCGGGGTTGGGCAGCGGATGGCAGCAGCAGGGGCAGGGAGGGTGTGAGAATGGTGGGCACCTGGCTCTCTACCCGTCCTCGTCTGTACCTGGGAGTATCAACACGGTGGGCACGGGCGGCAGCAGCAACACCATCCTGTTTGGCGGCGGCGGAGGGCAGCACAGTCCCCTGAAGCGTTCGGTGTCCCTTACCCCCCCGATGAGTGATGGCTCCTTGGCCGGTTCCTCCTCCTTGGGTTTGGGTCATGGCTGGCTCTCCCAGGAGGACCTGCGCGGGCCccggggggggggaggaggaggaggaggagggctgggGCTGGCCCCCACCGACCCCCACCACGCACCCCTCTCCCCCCAGAGCAGCGTAGCGTCTTCGGGTAGTGGCGGCAGCGAGCACCTGGAGGACGCaggtgtaggaggaggaggatgctgTGGAGGAAGTTTGTACCGCAGGAGCACATTTCATAAGGAGGGCAGCGGCATGAGGGATGTGCCGGCCTGGCTGAAAAGCCTCCGTCTCCACAAGTATGCGGCTCTATTCTCCACCATGACGTACGACGAGATGATGTCACTGACCGAACAACAGCTGGAATCACAGAATGTCACCAAAGGGGCGCGCCACAAGATAGTCATCAGCATCCACAAACTGAAGGAGCGCCAGAACATGCTGCGCTGCCTAGAGAAGGACGTGTTGGAAGGGGGTAACCTGCGCGCCCCTCTTGCCGAGCTCCACCAGATGATCCTGACACCCATCAAGGCTGTGGCCAGCGACGAGTCGTTGCCCTCCTCGACCACACAGCAACCCCTGTTGAGCCTTGAGGGGAAGAGCAGCGCCGCCCCGGGCTCTCACCTGGCCCCCgtaggaggggaaggggagacagGGGCTACCCTCATCGCCGAAGGGGACATCCCCGGCCAGTTCACTCGCGTCATGGGCAAAGtttgcACACAGCTCCTGGTGTCCAGGCCAGATGAAGAGAACATCAGCTCCTATATGCAGCTCATTGACAAGTGCCTTCTGcatgaggcgtTCACTGAGACACAGAAGAAGCGGCTGTTGTCATGGAAACAGCAGGTGCAGAAGCTGTTCCGCTCGTTCCCCAGGAAGACTCTCCTGGACATGGCGGGCTACCGGGCGCAGAGGAGcagcagtagccgGGGCTTCGGCCAGTCCAACTCTCTCCCCACGGCGGGCTGCGTGGGGGGCAGCAGTAGCATGTCAGCCCGCCGGAGCCTGCGCCAGTTCCAGATGCCCTCACGGAGCTTGCCCGGCGCCAGGCTTGGCCTGCTTGGCACCGCCGGCCTCCTGGGACCCACGCCGCGCAGCGCCAGCAGCACCTCCACCGGTCTCAAGCAGGGACGACAGGGTTTATGGTTTGCCAACCCCGGAGGCAGTAATAGCATGCCCAGCCGAACCCACAGCTCAGTGCAGAGGACCCGCTCCTTGCCTGTCCACACCACGCCACACACCATGGTCATGTTTCAGCAGTCTGATCTCCAAGTGCCAGTGACGGAACCAGACATCAACAACCGGCTGGAGTCTCTGTGTTTGAGTATGACAGAGCATGCCCTGGGAGATGGAGTTGACCGCACATCCACCATCTGAGAGTAGGACCTGAAGGAGACCCGGGGACATCTGGtcccacacacaccccacacacacacacacacacaccccacagccAATGGGAGAGGTCAACCGGGGTGGTTGCTGGGCTGCAAATCATGCCACGGCGAGCCAATCCGCAAAAACTGCTAACAAACGGCTAACGCAGTAGCACATTGGCATGTTACCATCACAACAAAACACGGCTACGCCCCCAGCACACTCATAAGTACCTGGGCTTCAGTGATGGATGAGAAATGCAGTGCAGACTCCTTTCCCCACCCAGTATAACTACCCACAACTGTGCCGGAGGAGTGCCCTCTGCTGGGCTGGGGGAGATATAGCAGCGCTGGGGGTCAGCATCGGCCAACAACCGATTGGCAGACCCTGGACCCAGTTGAAGGGGGAGTAGtgcattatgggtactgtagtatATCATGCTATAAGAGTCAAGACTGTAGACTTCCCTTCTCCGGCCCCAGTCCCCACACCAGTTCGCACCAGTCAGCATTTCTACCGGCCGTACCATATGACGTCTCACTGAGTCAAAAACAAACACAAGACAAGTAAGTAAATAATCAAAGTGGGACACATTGTGAGAGAAGCCTCGGCATTCATCTCACTGTTTGGGAGAGTTTTAGGGAGGAAGTTTTTCAAAAGACCCCTATGCTCTGTATAGGTGACAGAAAAAAAGCATTTTTACATGTATGTATTGTTTACATAAGATGCTACTATGGTACCGAAACATTTATACATTTCAGCTATGAATGTTATctcttatattttatttttttaaatacattttgggAAAGTAGTAGCATACTACCGTACTAGTCGCTTAATAGACTAACGTCCCACAGTAGCTATCATAGTTTACAACCAACATTATCATAGTTTTTTTtgctttttgtttctttctttcgCTTACCAGCAGCCAAGCTGTGTGAAAATGAAAACGCTAAAAGGAGAGcaggatgaagtggaagtgtgtaGAAGGAAAAACAGAGAAATGagaagagatgggaggaggggaaATAAAAGTGGGGAGACACAGGATGGTCTGTACAAAGTGATTTAGAAGGAGAAGAGGACGTTAGTGATGATGGATCCATGTCAGAGGCAGGGACTTTGATTTGAAACGACAGGAAAATTGTGTAGTAGTAGCGTTGTGGTGAAGTTCTGGGTAAATGTTATAGACAGGCCAATATATATAATCTTTTAGAATTCTTTAATCTTTGTCCCTGCAGACTATGTATTGAAAGTTTATGCTGTTAATTTGCTTGGGCTGTGTCTGGATTTGGTAGTGAAGTTTCTTTAACAGGTGCACAACGTTGTGTGACCTATTCTCTAATTAGGGCTAGTCAGTGTGGGTCAGTAGTATTTTCTATGTGTCTCATTGTGAAATAGAATGAGGATTACATGTGTGTTTTCAGTCCAGGGTAGGTACTATAGCGTTGTATGCTATATGCTCTCATTTTACTAGGAAGTAAGAGATGGTCAAAGATGTTCTGAATCAAGGAGAAAAGATGTACACAGAGGACAGGAGAATCAGGAAGTAGCTTTGGCGGATGTAAACGAGAAGGTTGCTGGGGAGGTTTCCTTTCCCTCAAGCAGCATAGAAACACCAACCCATGAAGGGTTTAAAACTAGTTTAAATTCCCGAGAATACTCTTTTTAGTACTTAACTCCACCTAGTGGCAAAATGCAGTTAGACAGCCAGGCACTTGGAATGAGGCTTTTTGTACTtcaatttcttgtttgtttttttgtcttaatatttgtcttaaccctaacccttggttCATTGTTGTCTGCATGACATGCTATAAGGGTAGGTTCATGGTAAAATAAGCTCTTTAAAGCTGAATTATGCTCTGTTGTTATTAGCCACTGCCATCCTGTAAGTGGGTGTTTTGTGCATGGAAGATCACGCTAATGTATTGTGCCTGAATGGGCATCCTGATTTGGTGTGGTGTTTTGTGAAGGTTTTTGCGCAACTTTTTGGGTTAGTTTATTTTTGAATTCTTGTGTGTCTCGTTTTCTTGTTCTGCACTTGGTGTTGTGATATTTTACTACAGCTAATCAATCCATCATTAACAATGCCAATAGGTGCAGCAATAGAAATGGCAAGTATGTGCAATAAACGTTCATCAGTGGGGAGAGGCAAGTGGTTTGGAGAGGAAAGGTTAAGAGTTTTGTAGTTCAGAAAAAGGGACTTGACTTATTGTGGAGGTGAACTTGTAGTGAGATGAAACCAGCTTCATGCCAAATGCACCTCTGCCAAAGTAACTACAGCCCACTCCCAAGTGCGCATTGAACTTAAGCTCTCAGACTGAGCCATCTTGTCATAAAGTAGGGTTGACCCCAGTCAAACCTTTAATCTGTTATTGTCAAAATGTCATTGATGCTTGTAGTAATGTTTCATAGTCAGTCAAATGTCACTGCTTCACTAAAAACGCATGGCCTTAACTGGGACGGTGACAGGAAAATTCAATAAAGCATGAATTGGCATGGACCCTTTTGTGGCACGGTTTGGTTTAGTGGCAGCATTACAGTATTGGTATACTGATGCAACATGCATCAGTGGATATGTGGTAGTTAGATCCACTTGCCACTGCCACATAAATTGATACTATATTAGCAGATtcaaattatttatatatttttttctattgttgCAGAGGTGATTTATTGTATTCATTTAGATGTATTATTTAAAGTACCACATGTATTAATTTGCTATGGCTGGTGACCATAAGTACATCTCAAATATTAACATAGTTATTTTTGTTTTGAACTAAAGTATAATCGcacatttttatatttaataGTGGAGTAGAGAGACACTCTGTGTCTTGTTTGGATTCGTTTTTTTCTTCTGACTGACGGTTTGGGAACGCTTGCTATCCTGGTTGGCCAAATGTCTGAACGTGGCCACCAGCAGAACAAACAGGATAGGGGGCGACGACCCTTTTGAAATATTACCAAATAGAACAGGCCACGGTAACCTAGACTGAGATGGAGAGTCATCTGGGGTTATTTCTGTGGGATAAGGCCCTTTACTACTTTGGTACGCTTCGGCTATGAGCATCGGAGGTCCAGGGATAGCCCTTTGGGAATGGGTAACCAGTGCTTACCAAGCTAACCACCATCTGCATGGctagtgatgacatcacagtggATGGCTAAGATATGTAGCCTATCCAAAAGACTGGCAACAACTCCAGGGCAGAGGGTAGCGCATTCTACACACTCACTACTGCCCAtgaggttatgtgtgtgtgtgaatgtagtgtacactacagTATGTGCCTATGAGAGAGCGATGGAGCAGAGGGAGTAAACAGAAGAGCTGTGAATGTCATTGATATATTACTGCAACTGCGTGTGTGAAGTAGCCTGATGACAAGTGGAACGGACATTGACTCCTCCGGAAGCTGTTCACCTTGTGTAACACAAAAAAAAGGgggttttatttgtattttccaAAGCGCATTGGCATGTTACCACTCTCCCCTATGAGGCTGGGATGAGAGAGATCATCTGTACACACTGCAGTATTAACAGTTAGAGGATAACCTTGATATTccaaatatattattatttaatgtttttttttttactgacatTTTTGTTGGTCATAGACACTCTGCACATTAGTCAAATATCGCATCATTATTCGATGGCGAGACTTTTTTTTGTAAACTCGAAGGCATCCATACTGTAACAAAAGTTCTACAGCTTTACTGtgctctgtttgttttgtttttgttatcAAAGAGCCGATGTCCTGTATTGACTGCAGGCTTACAAATATATTTGAAAAAATATTATCCTATGTTTAAGAAAAAACTCAATCTCCCAAAAAAAAGGTAATTTATATTATAGAAATGCATGAGGCTGGGAAGTCATATTTAAAATAACAAATGGCAGTGCCTTTTTTTTTACTCGACATTTAcccaaaatgtaaatgtgttgaCAGTCAAAATGGTGGCATCCTCCAAACTGCATACTAGGTCCTCTAGgacattttaaaatgtatctTTTGGCGTCACGTTGTAGACAAAAACAATATGGAACACTTCTTTCTGGCCTCGTGTTGtcagtgtatttttttgtttctGTAGGTACTTTTCAATGCTGATATGAAGTTAGGAATTATACCTGTCTGTACAACAAACAGATgtatatgttttgtgtgtgtttgcacgtgtGTGTCTTGTTGTAACTGTAAAATACTTATTCTCAAATGTACCAGAAATGCTGCGACTTGGCATGGCCCAATCAAAAGAAGGCTGTTGTTTTTCTTCCTTTGTTCAGGCATCGGAGGATGACTGCCTCTCAGCTGTATgtgtgtattatacagtatcaagGGATTGTATGGTCACTATGCCCACAGTTCAGTAACACATGAGGGCTGACGTTCAGTTCAGAGAGACCTGAGGTCCACTGTACACTACATAGATCAGTATTACAACCAGTCTCTCTGTAGAGCCAGCCATTTAGAACTGGGCCAGTATTTACAAAGAGTCTGAGTAGTTGTGCTTTTTACATGCCTTCTAGATCATAATGATTAAAATTATATGGACAGGGGGGGACCTGATCCCAGAGTTACTTTTTTAATTCGGGCCCTGATGCCATGCCAAAAGCCTGTCTCAGGTTCTGTGTTCCTGTAGCTACTTGCCTCGGGCAGGGTTTGGGTCTGGCTTGTGAGAGGAAGTGTGGATGCTCATCTGTTCTAAATGGATCTATGGATCTCTTGTGTAAATGTATGTATTTTCATTTTTGTCTATGAGAGATTGTGGTTGCTGTCTATTCAGAATGGGAGCGCTGCGAGTGAGTAAGCGAAAGATACTGAATGAATCGACTGAATGCTTTGTTTTGTGGTGTCTGTGTTCAAATGCTTGACATCTTTATTATTATAACCACagacaaaaaatgtattaaagaAAAACTTGTAAAattgtctgtggataaaaagttTTTCAAAATTCCAATGAAAGGGTCATGTCTTGTATTCTGAGAGGCCACACAATAGCAGGAGACGATTCTGGCTACTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837355 lncRNA downstream 9253 24043250 ~ 24049119 (-) True G1604928
TU1837333 lncRNA downstream 76986 23981151 ~ 23981386 (-) True G1604907
TU1837332 lncRNA downstream 77775 23980369 ~ 23980597 (-) True G1604906
TU1837330 lncRNA downstream 80635 23977332 ~ 23977737 (-) True G1604904
TU1836882 lncRNA downstream 99076 23959006 ~ 23959296 (-) True G1604487
TU1837422 lncRNA upstream 1051 24160783 ~ 24161223 (-) True G1604992
TU1837423 lncRNA upstream 1540 24161272 ~ 24161494 (-) True G1604993
TU1837432 lncRNA upstream 11880 24171612 ~ 24172955 (-) True G1605001
TU1837433 lncRNA upstream 95513 24255245 ~ 24256435 (-) True G1605002
TU1837487 lncRNA upstream 101807 24261539 ~ 24262080 (-) True G1605054
XM_036955491.1 mRNA downstream 491273 23424239 ~ 23567099 (-) True LOC110498671
XM_021573602.2 mRNA downstream 700543 23348571 ~ 23357829 (-) True LOC110497480
XM_021573603.2 mRNA downstream 700544 23348571 ~ 23357828 (-) False LOC110497480
XM_021573130.2 mRNA downstream 730777 23319223 ~ 23327595 (-) True LOC100305151
NM_001165055.1 mRNA downstream 730933 23319207 ~ 23327439 (-) False LOC100305151
XM_021573687.2 mRNA upstream 16600 24176332 ~ 24206622 (-) False gpr137c
XM_021573691.2 mRNA upstream 157601 24317333 ~ 24345566 (-) True LOC110497541
XM_021573694.2 mRNA upstream 214826 24374558 ~ 24385859 (-) False LOC110497542
XM_021573692.2 mRNA upstream 214826 24374558 ~ 24385860 (-) True LOC110497542
XM_036954478.1 mRNA upstream 238838 24398570 ~ 24475536 (-) True LOC110497543
TU1837328 other downstream 84266 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 913828 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 1642329 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 1654535 22403516 ~ 22403837 (-) True G1602753
TU1832025 other downstream 3921811 20127211 ~ 20136561 (-) True G1600030
TU1837435 other upstream 30966 24190698 ~ 24206438 (-) True gpr137c
TU1837685 other upstream 392806 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 650988 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 692737 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 1223028 25382760 ~ 25395212 (-) False G1606398

Expression Profile