RNA id: XM_021573687.2


Basic Information

Item Value
RNA id XM_021573687.2
length 3173
RNA type mRNA
GC content 0.48
exon number 7
gene id gpr137c
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24176332 ~ 24206622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTTCATTGATTTCAACACAATGTGTGATGGAAAGGGAGCCAAGATGGCGTTGGAAGAGAGCTAGTTCAAGGCTGCAGCTTATTGGTCAGTAGGCGGGATCTAAACTGCAGCTTCACTCAGCTGATCTCTCCCTACTTCACGTCCCCTTTTTTTCCTGAGTTGTTTTTTTGCACAGATGAGCTGCTTTGCAGAGACTGGAGGGTtttcttgtttgtctgttttatACCTATAGCTGTTAAGTCATCCGTTCTGTCGTTAACCCTCGGATTTATGTCGGTAGgtggttggttagttagttagtgtagTATTATTAAGCTCGTGCATTTGTTTTTGAGTGGACATcaaaaaataaattatacaaaatTCGTGGGAAATACATCAAAAACTGGATCTTCTACTATATTAGAATAAAACATTAGATATGCTTATTTAAGTCGTTGTTGTTACGCTTATCCGTTCGCTATGTTGTTGAAAGAAAACCAGGTCAGCTTAAGTGTTTTCACGTCTGTAACGGACTCAAGTGATGAACCGATTCGAGCTGCGGTTCCTCCATCTGTGGAGCTCGGACTCACCATTGTTTATACCATCCTATATTCGCTActttttgtgtttgtttacttGCAACTTTGGCTCATTTTGCGTTATGGACACAAGCGCTTCAGCTACCAGAGtgtctttctttttctctgtTTGCTGTGGTCAGCGCTAAGGACTACATTATTTTCATTCTACTTCAAGAACGTTGTCCAAGCAAACCAGTTGCAGCCTTTGCCTTACTGGCTGTTGTACTGTTTTCCAGTATGCCTCCAATTTTTCACTCTGTGTCTGCTCAATCTTTATTTTGCACAGGTAATGTTTAAAGCCAAAGCAAAATATTCTCCGGAGCTCAACAAATACAAGCTGCCCATGCATCTGGCGTTCATCTTTGCCAGCCTTTTCTTCCTCGTAGTAAACCTGACATGCGCCATGCTGGTGCAGGGGGGCATAGGGGGTGGCATGGGGGGCGAGGCGGGCGAGGCAGAGGTGCGGCAGGTGGTGCTGGCCCGGGTGCTGGTCAACGACAGCCTCTTCGTACTCTGCGCCATCTCGCTGGCTGTGTGCATTTTCAAGATTGCCAAGATGTCCTCGTCCAACGTCTACCTCGAATCCAAGGGTACGTCAGTGTGCCAAGCTACTGTCATAGGTGCTGCAGTCATCCTGCTCTACACGTCCAGGGCCAGCTATAACCTGGTGGTGGTGGCTCTCTCTCCAGAGAACCGTCCCAGCGCCTTTAACTACAGCTGGTACAACGTCTCTGACCAGGCAGACATAGAGAAGATCAGTGGAGAGGCCTACATCATCTTTGGGATCATCCTCTTTTTCTGGGAGCTGCTACCCACCAGTCTGGTCGTGGTCTTCTTCAGGGTACAGAGGCCCAATCAGAACCTAGCACCAGGAGGAATGATCAACAGTCACAGCTTCAGTTCCAAGGCCTATTTTTTTGATAACCCCCGGAGGTACGACAGCGATGATGACCTGTCCAGGAGCAACAACTCCAGAGCAGATCGACCGAATAGTTTCCTGTCCTCGACGCCCCAGTTGGACCCCAGCTGGTACAGCTCCACCCAGAGGAACGGCAGCCTTACGGGGATCCCCCATCTCCCCACCGGCTCCCAGACCTCCACTGCACCCCTTCTCCTAGCCTACGGCAACATCCATTCCAACCAGCACCATAACTACTATTCCACCCCCCAGAACTACTATTCTACCCCCCAGAATCACTACTGCACCCCTCAGAACTAACCACCCCCGCCGTCCCCAGTAGATACCCCTGAAAGTAATCCAGAAAACACTCAGGAAAGGGGCGCTCCTGACCTTCAGCTACATGGCTACGACCCTCTGGGTTACCCTAGCGATCCTGTGACTGGCGCTGTGTGGCCACACCTCCCTCATTCCAGCTTTCAACCCGGTCCCACCCCACCAGGGCTACTTAACTACCGTCTTGTTGTAGGCATGGTGACGACCATTGAGATTTCTAGGGCCAGACGAGGGGAGATCATTTGAGGTCAGTGGTGGTTAGGGAATGGTCAGCTGAGTGATATTCTGTTTATTAAAAAAGCTTTCCAACATGTCTATTACCACAGTCCTGAAACAGAGGTCTGCTACCCAACCCGAGCCCAACGGCCCCCGACATTATACATCGGGTTAGGGCCAGGTAGGGTCTTTTTTTCATCAATAACTAGAGAACGGGCAGGGCTCGGGTATCACTAGATTGATCACTAACATTTTGAAGCTGAACCATTTGTGTGTTCTCTGCTGCGCAGTACAGTCATATTTAACTAAGTTCTTCAAccacattacatataaaacaggAAAGATTATTTCACAGAAAATAAATGTTCCTTGAGTTTTTTAGGAGTTTAGAGTGATGAAAAGTAGCCCAAGCAGAGCCATTGCTATGGATACTCAGACTCAGAGCCACCATGAGCTGAGCGGATGCAGAGCGAGTGACAGACGGAGGAGCAGCTAATGGATTTACAAACTGAGGAAGTTATTTCTGATTTGGGGTTTTTGGCAGGGCATTAAATTTGGCAGAAGCAATTGGGCCTGGGTAGTGTAGGGCCTGAACGTTGTGGGCATGGGTAGGGCTCGGGCTTTACACTCTTGTCCGTGCAGGGCTCTTCCTGGAACATTGTACTATTCCTAAGAAGTGTTTGTAAGGAAGGGATTGTGCTTCTCAgcttttccacacacacacactctatgtTTGTCGGACATCAAACAGAAAAGTTAGTCCTCTATCTCTTTCAAGGACCAGACAAGTACATGGACCAGGAAGGACCAGGAAGGGTTAATAAATTTCCTATTTTGCTTTGGTCCAGTGGGCAGTTCTCCCCGCTACCCCCTGCACACAGACTCCCCTCCATGAGTCTGGAGGTGACATTTGCACTTGAAAAAATCCCCTCACTTCACATTCTGAGGACAAGACTCTGGCTTTAATGTAGACTTGGATCTTTATACAATCTCAGACTTTGTGTTCCTTCCCTGGACCATGTCTCATTTCCCTGTAAAGACCAGTTGTTATCTGAGCAATGAGACATCCATGACCATGTCCTTCTAAACCAGCACCAAATGGGGCTAGAATCATGGGCAATGCTCTCAGTATTCGAGCCCAATGTGCACTGGGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837432 lncRNA downstream 3377 24171612 ~ 24172955 (-) True G1605001
TU1837423 lncRNA downstream 14838 24161272 ~ 24161494 (-) True G1604993
TU1837422 lncRNA downstream 15109 24160783 ~ 24161223 (-) True G1604992
TU1837407 lncRNA downstream 37928 24103257 ~ 24138404 (-) True G1604979
TU1837391 lncRNA downstream 107696 24068360 ~ 24068636 (-) True G1604963
TU1837433 lncRNA upstream 48623 24255245 ~ 24256435 (-) True G1605002
TU1837487 lncRNA upstream 54917 24261539 ~ 24262080 (-) True G1605054
TU1837488 lncRNA upstream 55660 24262282 ~ 24263132 (-) True G1605055
TU1837494 lncRNA upstream 61902 24268524 ~ 24268758 (-) True G1605061
TU1837552 lncRNA upstream 142860 24349482 ~ 24349771 (-) True G1605116
XM_021573682.2 mRNA downstream 16600 24058372 ~ 24159732 (-) False LOC110497537
XM_036954474.1 mRNA downstream 16600 24058372 ~ 24159732 (-) False LOC110497537
XM_021573684.2 mRNA downstream 16601 24058372 ~ 24159731 (-) False LOC110497537
XM_036955491.1 mRNA downstream 609233 23424239 ~ 23567099 (-) True LOC110498671
XM_021573602.2 mRNA downstream 818503 23348571 ~ 23357829 (-) True LOC110497480
XM_021573691.2 mRNA upstream 110711 24317333 ~ 24345566 (-) True LOC110497541
XM_021573694.2 mRNA upstream 167936 24374558 ~ 24385859 (-) False LOC110497542
XM_021573692.2 mRNA upstream 167936 24374558 ~ 24385860 (-) True LOC110497542
XM_036954478.1 mRNA upstream 191948 24398570 ~ 24475536 (-) True LOC110497543
XM_021575224.2 mRNA upstream 333359 24539981 ~ 24541835 (-) True LOC110498563
TU1837328 other downstream 202226 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1031788 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 1760289 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 1772495 22403516 ~ 22403837 (-) True G1602753
TU1832025 other downstream 4039771 20127211 ~ 20136561 (-) True G1600030
TU1837685 other upstream 345916 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 604098 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 645847 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 1176138 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1471726 25678348 ~ 25686102 (-) True dio2

Expression Profile