RNA id: XM_021573691.2


Basic Information

Item Value
RNA id XM_021573691.2
length 3815
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110497541
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24317333 ~ 24345566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCATTACTTCGCTCAAACAGCTCATTCGGAGAGAGGAACCCATGGCTCACAGACGCAGAACATCCGCGTTATCCTTACCAAAGAAAAACAAACGCCGGCAAAACATAGACCCTTAAATCATGTACGGAATGACTACACATAGGCTGGTTCAGACTTTTTTGGTCATTTTTTTCTCTGGACAGGAAACAATATAGAAGTAGGGCAAAGGGTGCCTATATTTTGTGAATCAAGACTTCGCCAGAGTTGTAAATGTGTGTGAAgaaaaggtggagagagaaagcGCGCGGCTCCATACTCAATCAACTTGTAGCATGATCTCGCATCACAAGCTCCGGATCACAGCAAAGCAAAACAAAGGCACAAACTTTATTTCATAAGAGGAATAGAAGTTGGCATACTTCACTTTGTGCTTTTTATTTTTGAAGTGCTGAAACAAAAGCACTATTTTCTTCTCAGGAACAGTGAATCGTTTTGGAATCTCACCCAATTAGCACTGAAGTCTTGGACGGAGGCAAAACTCTTTCTATGGCAAACGACACCGAGAAGGACCCATGCCACAGCAACCTGCACATCGACAATGGGAACCCGCGCATCAGCGCGATAATGTTCTCTGCCGGAGTGATAGGGAACTTGGCCGCTTTGATCCTTCTGGAGATCCGTCGCAGGAAGGACAAGAGCCGGCAGCGACTGTCGCTCTTCCACGTCCTGGTCACCACGCTGGTCGTCACTGACTTGATGGGCACCTGTCTGGTCAGTCCTTTCGTCCTGGCagcctactcctttaacaccacCATTATTTCTATGATTGACAGTAACCCTCCCGCAATGTGTGAGTATTTTGGATTCTGTATGACTTTTTTCAGCTTGGCCACGTTATCTGTCCTCTTCGCAATGGCGCTTGAGCGATGCCTCTCCATTGGGTGTCCATACTTCTACGGGCGGCACGTCACCAAACGTTGTGGATACATCACCATTCCATTCATCTATTTAGTTTGCGGGGTGTTTTGCCTCATGCCCTTTTTGGGTTTTGGGGACTACGTGCAGTATTGCCCGGGGACGTGGTGCTTCATTGACATGAATCCGTTAATGCCGGAAGACCGAGTTTATCCAGTCCTTTACGCAACCGTTATGCTCATCCTAGTCCTCGCTATAGCGGCTTGTAACGCCTTTGTCGTATACCACCTGGTTTTGATGTACCGGAGGCGCAAACTAAACGGGGGATCCGTGACAACTCGGAGTAAGAAGGACCGGAGAGTCCTCTCCATGGCCGAAGAGGTCGAACATCTTATAGTACTGGTGTTCATGACGGTGATATTCGTGATTTGCTCCCTTCCTCTGGTGaTCCGTGTTTATATCAACTCCACGGGGCAGAGGAAGGAGAGCCACAAGATGGACCTCATcgccctcctctttctctcaacCAACTCCATCGTGGACCCCTGGGTGTTCATCTTCCTCAGCCCATCAGTGCTGCGCTTCTTCTGGGGAGCCCTGTGCAAGACGCCCCTCCTGCGGTCCAGGGAGTCTTTCTTCAAGTCCTCCCTGGGGAAGCAGACCCATGCCCAGCTGGAGCTGTGCCATCCCAGTGCTGTCTCAGAGTTCACCCACCCTCCGATGTCCACGCATATGGTTTGACCCTTTGATGTACTGGACCTAATTGGGGCCTTGTATGTTGTCTCTGAAGGGAGAAGCCACTCCGAATAGTGCCACTGCCCAAATGTGCTGCCTGCCTAGTGGTTTGGTTATATTGCAgggatgtggggtgtgtgtgtagctaCTTAGGGGCAACTTTTGGACAAGTGGAGCGGCAACCTACACATTCCTGCAAACGTAGGCTGCTGCTTGCTTGTTTTGGAACAAGCTCTGAGGCTCATTTTGGAAGCCTCCGGAGGCCAGCAACAGACATTTGACGGGCAGTTAGACTCCAACTCTGAGGAGAATGGAGTTGCAGTACAGGGTCACGTTCTTAAAAGTACTACCCATTATTTGTTTTTACAGCCTGGACTCTCAGATCAGAGGCCACTACAAGGACAGCAAACCAGGATTCACATCACTGAAGGAACTAAATCAGATAAGGACTGTTTATTCTATGTGAGTTGATCATGCTCCAGATGCATGCATTGTTGCCACCGTGCCCTGTTACCACACCCTGGGACTCCCAGGGAAGTTTACATGAATTCTTTCTATTGAGATGTTCCTTCAGCCATCAAATGGAATCCTTGTGATTTTGGGAATTGTTATCAGAAAAGTCGGAGTCATGCATGTAATCCAAGCAAGATTCACACACTCCAAACCtatgttcaaatactatttagggTATTTCAAATACATTTGGGTGTAAGCATTTGGTCATTTTATTCCGAAAACACAAGTAGTTTaatattggaatgtatttggaaataacCTTGGAGAGTATTTGCATGTATTTcgtaaataaatatttaaatacTACCATGCATTTCAACCAGGTCTGTTTGGTATTTGAAATAATGTAGTTGGAAATACTTTCAAAATGTAGGCTATTTATAGTAGAAGTAGTTGATTCGGGACACATTAAAATATTAGTACGATATTTATACTTTATTTGAGTAAAAAGTACTAAAATACggtacacagaaaataacaaATAATCAAATACATGTATTTGAGCCCAggcctgacacacacatacactatccCCTCTCCCTGCAGCTATGACCCGTTGACCTTTCCCCTGTCACCCCACTGTGTACTCACCTCAAACGGTCAAAGGGTAATAGCTCGAGAGTGACATTTCTTTTTGTAACATGTTTTATCAAACTaattaatgtggttatgttatgaGAATTGTGCTATGAGAGGAGGTTTCGTCTGTACCCTTATGAGATACCtcagtgttttattttatttcatctttatttaaccaggtaggccagttgaaaggACAGCTTGAGTATTTATTATGTGTCCCAGCCCTCAGATCTCATTGATGTGTTAGTGTACCTGGTGACAAGGTACTCATGAATGTTCAGTGCGCAGTTGTAAATGTgtcgttcgtgtgtgtgtgtgtcagtaaacCTTTTTATGTGACGAAAGTAAATGTTGTATAAAAAAtgtcacgacaggcctgatggaaaaaGAAAATTTGTTGgtaaacatttgaaatgtcaacAAGACAATATGCCAGACAATGTGGGATTTTTTTGTGTCGATAACATTTATTATGCatgaaatggcggtggaaacgctTTTTTCATTTCCAATacatatcgagggtcttattctggtgacatgatgattcaTGCTTGGCTgtcgtttgacaaataaaaataatcttgctattttgtccataataatgtcataattTAGGCTATAGCCGCACTGCATCTGCGAGTGCGAGCTATTAGCTAGTGtgcacgtgccaagaccagagtggacACATTCGCTATAAAACGCAACTTTTTTTGTGACAagaccatcagtagagttgaaaatgtgacgGAAACCCATTTGACCTTTTATTCGGGACATGGGAAAACACATTTATCTgtaacaagtcaatttgatggaaacaactctctggtgggaaaatgcgcatgTTGTTTTCATatggattttagaatatttgcatgaaaatctgtcgccaaatggatggaaacctagctaatgtCAAAGAGATGGCAATGAAAAAAACATGATAACAGCAAGAAATCCTACCtctaaagttgaagtcggaagtttacatacaccttagccaaatacatataaactcagtttttcacaatacctgacatttaatcctagtaaacattccctgtcttaggtcagttagg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04259 PTGER2; prostaglandin E receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837494 lncRNA downstream 48575 24268524 ~ 24268758 (-) True G1605061
TU1837488 lncRNA downstream 54201 24262282 ~ 24263132 (-) True G1605055
TU1837487 lncRNA downstream 55253 24261539 ~ 24262080 (-) True G1605054
TU1837433 lncRNA downstream 60898 24255245 ~ 24256435 (-) True G1605002
TU1837432 lncRNA downstream 144378 24171612 ~ 24172955 (-) True G1605001
TU1837552 lncRNA upstream 3916 24349482 ~ 24349771 (-) True G1605116
TU1837554 lncRNA upstream 6314 24351880 ~ 24352171 (-) True G1605118
TU1837556 lncRNA upstream 7235 24352801 ~ 24353218 (-) True G1605120
TU1837557 lncRNA upstream 8061 24353627 ~ 24353861 (-) True G1605121
TU1837561 lncRNA upstream 11445 24357011 ~ 24357213 (-) True G1605125
XM_021573687.2 mRNA downstream 110711 24176332 ~ 24206622 (-) False gpr137c
XM_021573682.2 mRNA downstream 157601 24058372 ~ 24159732 (-) False LOC110497537
XM_036954474.1 mRNA downstream 157601 24058372 ~ 24159732 (-) False LOC110497537
XM_021573684.2 mRNA downstream 157602 24058372 ~ 24159731 (-) False LOC110497537
XM_036955491.1 mRNA downstream 750234 23424239 ~ 23567099 (-) True LOC110498671
XM_021573694.2 mRNA upstream 28992 24374558 ~ 24385859 (-) False LOC110497542
XM_021573692.2 mRNA upstream 28992 24374558 ~ 24385860 (-) True LOC110497542
XM_036954478.1 mRNA upstream 53004 24398570 ~ 24475536 (-) True LOC110497543
XM_021575224.2 mRNA upstream 194415 24539981 ~ 24541835 (-) True LOC110498563
XM_036955493.1 mRNA upstream 206807 24552373 ~ 24554024 (-) False LOC118941548
TU1837435 other downstream 110895 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 343227 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1172789 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 1901290 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 1913496 22403516 ~ 22403837 (-) True G1602753
TU1837685 other upstream 206972 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 465154 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 506903 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 1037194 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1332782 25678348 ~ 25686102 (-) True dio2

Expression Profile