RNA id: XM_036955493.1



Basic Information


Item Value
RNA id XM_036955493.1
length 451
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC118941548
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24552373 ~ 24554024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTTAGTTAATGAGTGCAGGGCTGGGGTGGATAGATGAGGGTATAAAGACAAGCAGGGAGCTGTGGCTGACTCTACTGTCACTGTCTTATAGTCACCATGTCTTTCTCAGGAAAATACCAGATGGAGTCACATGACAACTTTGAGTCTTTCATGGAGGCTGTTGGTCTCCCTGATGAGCTTATCCAGGAGGGCAAAGACGTCAAGAGCATCTCTGAGATTGAGGAGACTGGAGACCACTTCAAGGTGACTGTCAccacggggacaaagatcctcACCAACTCCTTCACCATTGGCCAGGAGACGGAGCTCGAGTCGCCGACCGGGGAGAAAGTCAATTCTGTGGTGATGAGGGAAGGTAACAAGCTGACGGCCATCCTGAATGGGATTGAATATGTCACAGAACTTACAGACGCAAACACCCTCGTCAAAAGGCGTGCTAAACAaACTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1837660 lncRNA downstream 37614 24513735 ~ 24514759 (-) True G1605214
TU1837561 lncRNA downstream 195160 24357011 ~ 24357213 (-) True G1605125
TU1837557 lncRNA downstream 198512 24353627 ~ 24353861 (-) True G1605121
TU1837556 lncRNA downstream 199155 24352801 ~ 24353218 (-) True G1605120
TU1837554 lncRNA downstream 200202 24351880 ~ 24352171 (-) True G1605118
TU1837837 lncRNA upstream 97960 24651984 ~ 24652290 (-) True G1605380
TU1837847 lncRNA upstream 111850 24665874 ~ 24666210 (-) True G1605390
TU1837856 lncRNA upstream 120622 24674646 ~ 24674855 (-) True G1605399
TU1837867 lncRNA upstream 131247 24685271 ~ 24685561 (-) True G1605410
TU1838039 lncRNA upstream 293188 24847212 ~ 24880338 (-) False sptlc2a
XM_021575224.2 mRNA downstream 10538 24539981 ~ 24541835 (-) True LOC110498563
XM_036954478.1 mRNA downstream 76837 24398570 ~ 24475536 (-) True LOC110497543
XM_021573692.2 mRNA downstream 166513 24374558 ~ 24385860 (-) True LOC110497542
XM_021573694.2 mRNA downstream 166514 24374558 ~ 24385859 (-) False LOC110497542
XM_021573691.2 mRNA downstream 206807 24317333 ~ 24345566 (-) True LOC110497541
XM_021575225.2 mRNA upstream 11431 24565455 ~ 24567309 (-) True LOC110498564
XM_021573698.2 mRNA upstream 150432 24704456 ~ 24727478 (-) False LOC110497545
XM_036954479.1 mRNA upstream 150432 24704456 ~ 24727478 (-) False LOC110497545
XM_036954481.1 mRNA upstream 150432 24704456 ~ 24727512 (-) False LOC110497545
XM_021573697.2 mRNA upstream 150432 24704456 ~ 24727518 (-) True LOC110497545
TU1837435 other downstream 345935 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 578267 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1407829 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 2136330 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 2148536 22403516 ~ 22403837 (-) True G1602753
TU1838053 other upstream 256696 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 298445 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 828736 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1124324 25678348 ~ 25686102 (-) True dio2
TU1840954 other upstream 1276413 25830437 ~ 25833377 (-) True ston2

Expression Profile