RNA id: XM_021575225.2


Basic Information

Item Value
RNA id XM_021575225.2
length 527
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110498564
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24565455 ~ 24567309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGTTAATGAGTGCAGGGCTGGGGTGGATAGATGGGGGTATAAAGACAAGCAGGGAGCTGTGGCTGACTCTACTGTCACTGTCTTATAGTCACCATGTCTTTCTCAGGAAAATACCAGATGGAGTCACATGACAACTTTGAGTCTTTCATGGAGGCTGTTGGTCTCCCTGATGAGCTTATCCAGGAGGGCAAAGACGTCAAGAGCATCTCTGAGATTGAGGAGACTGGAGACCACTTCAAGGTGACTGTCAccacggggacaaagatcctcACCAACTCCTTCACCATTGGCCAGGAGACGGAGCTCGAGTCGCCGACCGGGGAGAAAGTCAATTCTGTGGTGATGAGGGAAGGTAACAAGCTGACGGCCATCCTGAATGGGATTGAATATGTCACAGAACTTACAGACGCAAACACCCTCGTCAATACCATGACTCTGTCTGGCATGTCATACAAGAGGACCAGCAAACGAATGTGAAGATCTACTGCAATCTTTGGATGAATAAATTGTGAAAGGCATTGAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837660 lncRNA downstream 50696 24513735 ~ 24514759 (-) True G1605214
TU1837561 lncRNA downstream 208242 24357011 ~ 24357213 (-) True G1605125
TU1837557 lncRNA downstream 211594 24353627 ~ 24353861 (-) True G1605121
TU1837556 lncRNA downstream 212237 24352801 ~ 24353218 (-) True G1605120
TU1837554 lncRNA downstream 213284 24351880 ~ 24352171 (-) True G1605118
TU1837837 lncRNA upstream 84675 24651984 ~ 24652290 (-) True G1605380
TU1837847 lncRNA upstream 98565 24665874 ~ 24666210 (-) True G1605390
TU1837856 lncRNA upstream 107337 24674646 ~ 24674855 (-) True G1605399
TU1837867 lncRNA upstream 117962 24685271 ~ 24685561 (-) True G1605410
TU1838039 lncRNA upstream 279903 24847212 ~ 24880338 (-) False sptlc2a
XM_036955493.1 mRNA downstream 11431 24552373 ~ 24554024 (-) False LOC118941548
XM_021575224.2 mRNA downstream 23620 24539981 ~ 24541835 (-) True LOC110498563
XM_036954478.1 mRNA downstream 89919 24398570 ~ 24475536 (-) True LOC110497543
XM_021573692.2 mRNA downstream 179595 24374558 ~ 24385860 (-) True LOC110497542
XM_021573694.2 mRNA downstream 179596 24374558 ~ 24385859 (-) False LOC110497542
XM_021573698.2 mRNA upstream 137147 24704456 ~ 24727478 (-) False LOC110497545
XM_036954479.1 mRNA upstream 137147 24704456 ~ 24727478 (-) False LOC110497545
XM_036954481.1 mRNA upstream 137147 24704456 ~ 24727512 (-) False LOC110497545
XM_021573697.2 mRNA upstream 137147 24704456 ~ 24727518 (-) True LOC110497545
XM_021573699.2 mRNA upstream 224703 24792012 ~ 24844151 (-) False LOC110497546
TU1837685 other downstream 11485 24552538 ~ 24553970 (-) True LOC118941548
TU1837435 other downstream 359017 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 591349 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1420911 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 2149412 22415418 ~ 22416043 (-) True G1602763
TU1838053 other upstream 243411 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 285160 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 815451 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1111039 25678348 ~ 25686102 (-) True dio2
TU1840954 other upstream 1263128 25830437 ~ 25833377 (-) True ston2

Expression Profile