RNA id: XM_036954481.1


Basic Information

Item Value
RNA id XM_036954481.1
length 3507
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110497545
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24704456 ~ 24727518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaactaATTGGATGCCAACTGCCGTTACATCTCATAGAAGAAGTGCAGttacgtcccaaggatcccgtaTAGATATCGCCACTAACTACCACAGACCAATGTTGACTTGGTGGCAACCGCATCCAGGCCAGCGTCTTCAGAGAGAAGGCAGTTTTCTTGGAGAAGCAGGAGTGTGTCCTCCTGAGTCCTCAGACTCATCAGTGGAGGCATTGTCTACATCAGGCATGCAACACCAGGAAGTTGACAAAGGAAAGAGCCTTCAACGTAAGAAGAGCTCCACAAAACTATCACACCCTCAACGACACCTGCAGGCACATTCTAGAAAGACGTCTTCCCACTGTTCAGATAGCGATGAATGTTTCTCTTCTGTGAGTTCTTACCAATGCCCTGAATGTAAGAAGAGATTCTCTAGCAATGCAGGTCTTCAAAAACACATGCGAATACATAGTGGTGAGAGGCCTTTCCAGTGCTCACAGTGTGACAAGAGTTTCATTAATAGTTCAAATCTTTATCAACACCTGCCAGTGCACTCTGGAGAGAAGCCtcaccactgctctgactgtgggcgAACTTTCTCTACAGTGCGGTATTTAACGAAACACAAGCGGCTACATTCAGGGATTAAGCCTTTCTGTTGCCATCAGTGTGACAAGAGGTTCATCAGATCAGACCAGTTAAAAGTCCATATGATGGCACATACTGGGGAGCGGCCTTATCAATGTGGTCAGTGTGAGAAGAGTTTTAAAATGAAGTCAAATCTTAAAGACCACCTGTTATTACACAAGGTGGAGATGTCTCACCACAGCCCTGACTGTGATCAAAGTTTCTCCACTGAGGAAACTTTAAAGGAACACATGCTGttacacacgggagagaaacctTTCCACTGTCTGCAATGCGACAAGAGGTCAAATGAGTTAAAAGATCATATGATGACTCATGAGGAGCAGCCTGATTCTCAGCCTAGTTCTGCTAATAGGTCACCAAGTTCCAGACATGAAGAACAAGAATGTCAGGAAATGTCACTTGCTGTCAAAAAAAGTTCTGATCTTATTCAACACCTGCAAGTAAATTCTGGAGAAAAGCCATTCCACTGTCTGCATTGCGAGAATAGGTACAGTACTTCAGAGGAGTTGAAAGAACATATGAAGACTCATGCTGAGGAGCTGCCTGATTCTCAGCCTGGTTCTGAGAATAGATCAATTACCAGAAGTGTAGAAAACCAATGTCAAGAGATGGCCCATACTGTCAAAAAACCTGACCGTAGCCCTGACTATGGAACAGATTTCGCTCAACAAGACAACCTGACAGAACACCAGCAAACACACACTGGGAGAAAGTCTCACCATTGCCCTGAATGTGGGAAAAAATACCATAGCGCTTCACATTTCAAAGAACACCTGCGTTCACACACTGGTGAGAGACCTTACCAGTGTTCTCAGTGTGCGAAGACTTTCACAAAACAAATACATCTTAAGCGGCATCTGTCCTCACACTCTGGAGAGAAACTTTACCATTGTGAAAATTGCAATTTATATTTCTCAAATGCATTGGAATTGAAAAGACACAAGCACACTGGAAAGAAGCCTCACCAATGctctgtctgtagtgttagtttccctGTATTAGAAGATCTAAAAGCACATGAAAGGATTCACACAGAGAATCCTCACCACTGCTCTGACTGCGGGCGAAATTTCTCTACCGCAGGTTGTTTAAAGAAACACAAGCTGTTACATTcaggagagaaacctttccaCTGCACACAGTGTGATAAGCGGTACACCAGAGCTGACCAGTTAAAAGATCATATGAAAATACATTCTGAAGAGAAGCCTTACCAATGCCCTGTTTGTGAGAAGAAATTCCATGATTCTAGCAAATTAAAAGTTCACCAGAGAGCAGTGCATACAGCATCTTCTTACatttgctctgactgtggaaagagctttgctcTACTGGGCAACCTTAATGCCCACCAGCGAACTCACACTGGGGTAAAGCCTCACCAGTGCCCCATCTGTGAAAAGAGATACTCAAAACGATCACATCTTAAAGAACATGTGCGTATACACACTGGTGAGAGACCTTACCAGTGCTCTCAGTGTGAAAAGACTTTCACAACACAAACAGGTCTTAACCatcacctgtacacacacactggagagaagccccGTCACCACTGTCCAGACTGTAACGAAAGTTTTACATCTTGGAGACCTTTTAAgagacataaacaacaacacactggagagaagcctcacCTGTGCTCTAACTGTGGTCTTACCTTCCTTATAGAAGAAGACCTAAAAGCACACGAAAggatacacactggagagaagcctcacCACTGTTCTGAGTGCGGGAAAGGATTATCTTCAGAAGGTAATTTGAAAAAACACAAGCGGTTAcatactggagagaagccttttcATTGTACGTATTGTGATGAGAAGTTCACAAGATCAGATCGGTTGAAAGTTCATATTATGTCGCATAATGGAGAGAAACCATACCAATGTCCTGAATGTGAGAAAAGCTACAATAATTCCACCCAATTGAAAAATCATCAGAGAATAATACATAGACAAGAAAAACCATACctttgctctgactgtggaaagagctTTGGTAAACTAGGCAACCTTACAGACCACCAGCGAATGCATACTGGGGAGAAGCCTTATGTCTGCCCTGAGTGTGGGAAACAGTTTAGCCACGGAAAACACTTAAAGATACATCAGCGTGAACATACTGGAGAAAAACCGTATCAATGTCTTGACTGTGAGAAATGTTTCACCCGGTTAGATTATCTAAAAACACACCAGGTTACGCATATGCCTCCTCACATGCGCTCTACTGGAGATAAACCCCAtcgctgctctgactgtgggaagtgTTTCAGGCAGATTTCTGGCCTTAGAGCACATCAGCAAACCCACACTGGAGAATCTCTTTATGACTGTACTGGATATGAAAAGAGTTTTGTAAACCTGTAAAATCTAAACTTGTGAGAAGCCATACCACTGCTTTGACTATGGGATCAACATTTCCCAATTGGGAACCTTTTTAAGAGACACCAGGTCACAAAACACAATCATTGTCCTATCTGAATAGCTATCTGAATAGTATGATGGCCTGAACATGGAAAAGGAGTGTTAATTATTACTATGTTACCATATTTAGACTTTTACTTTGCTACCATGCTTAGATCACCTTTTGTAGTTGGCATGTAAATATACTGTTTACTTAGCATAAGAGGTTCACAATAGATAAGCTAGGTATTGCCATACTCAATTAGTACTGACTTGTCAAATATTTGACCAGTAATTCTGGTAGTGGACATCTTGACAGAGACCAAGCATTCCTTAAGGTAGTTAAAGTACcttttttttctgttttgtttAGATAAGCTACAATTCTACTCAACTGTAACTTGAAGTGGTTTAAATGTCTGTTTGGTCAATTATTCTGATGTCAGATAATAAAGATACTTTTCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837867 lncRNA downstream 18895 24685271 ~ 24685561 (-) True G1605410
TU1837856 lncRNA downstream 29601 24674646 ~ 24674855 (-) True G1605399
TU1837847 lncRNA downstream 38246 24665874 ~ 24666210 (-) True G1605390
TU1837837 lncRNA downstream 52166 24651984 ~ 24652290 (-) True G1605380
TU1837660 lncRNA downstream 189697 24513735 ~ 24514759 (-) True G1605214
TU1838039 lncRNA upstream 119700 24847212 ~ 24880338 (-) False sptlc2a
TU1838812 lncRNA upstream 455335 25182847 ~ 25183049 (-) True G1606289
TU1838826 lncRNA upstream 476286 25203798 ~ 25204007 (-) True G1606301
TU1838829 lncRNA upstream 482784 25210296 ~ 25210670 (-) True G1606304
TU1838927 lncRNA upstream 655248 25382760 ~ 25395212 (-) True G1606398
XM_021575225.2 mRNA downstream 137147 24565455 ~ 24567309 (-) True LOC110498564
XM_036955493.1 mRNA downstream 150432 24552373 ~ 24554024 (-) False LOC118941548
XM_021575224.2 mRNA downstream 162621 24539981 ~ 24541835 (-) True LOC110498563
XM_036954478.1 mRNA downstream 228920 24398570 ~ 24475536 (-) True LOC110497543
XM_021573692.2 mRNA downstream 318596 24374558 ~ 24385860 (-) True LOC110497542
XM_021573699.2 mRNA upstream 64500 24792012 ~ 24844151 (-) False LOC110497546
XM_036954482.1 mRNA upstream 119576 24847088 ~ 24908731 (-) False sptlc2a
NM_001124268.1 mRNA upstream 950695 25678207 ~ 25685719 (-) False dio2
XM_021573706.2 mRNA upstream 1098278 25825790 ~ 25851285 (-) False ston2
XM_021573703.2 mRNA upstream 1098278 25825790 ~ 25876073 (-) False ston2
TU1837685 other downstream 150486 24552538 ~ 24553970 (-) True LOC118941548
TU1837435 other downstream 498018 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 730350 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1559912 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 2288413 22415418 ~ 22416043 (-) True G1602763
TU1838053 other upstream 83208 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 124957 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 655248 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 950836 25678348 ~ 25686102 (-) True dio2
TU1840954 other upstream 1102925 25830437 ~ 25833377 (-) True ston2

Expression Profile