RNA id: XM_036954482.1


Basic Information

Item Value
RNA id XM_036954482.1
length 4323
RNA type mRNA
GC content 0.46
exon number 12
gene id sptlc2a
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24847088 ~ 24908731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGTTGCATTCAGTTCATCTCAACGATTGCTACGTTGCGTGATGGTTTATACTGAACAAGACGTTTCCCCAAAACGGTGCGTACCGTCCTTCAACATCATTTGAGGTACGTCTGCTACTCTTTGGTGGGTGTGGCCTGATCAATACGGGGGATACCATTTGAAATCGCAAAACTCGTTCAGCAAGTTACAGTTATAGCCGTTATGTTGAATCAAAGGTTGAACATCGTGCTGTCTTACTGAACACACCCCTTGTGTCCGCGTTGTGGATTTTTGGGTGGGTTTGCGAGCGCACAACCCGGACAAGCACCAAAAACGAGTTCCCCATTCTGTGCTAGCCAGATACATGCAAGTTACTGTAGCCTCCACAATCATAGGCAAGGATGACCGAAAGCTCCGCGAACAAGCCGGCCAATGGACAAGTTTGTCACCGAGTAAAGAACGGAGTTAAACCGGGCAGAAACGGTTTCATAAAAAACCATCACCATTACCATCATCAGCAGCCGATGTACTGCTATCCCGAGGACAAGgtgcagCACACCGCGTGTAATGGCAGCAACGGCCTGGGCCTGTACAGTCGTCCCTTCATCGAGTCTTTTGAGGAAACGCCCATGCTGGTGGCGGTCCTCACCTACATGGGCTACGGCATCCTCACCATCTTCGGATACCTCCGAGACTTCCTCCGGGACTGGAAGATCGAGAGGTGTCACGTTGCCCGCgagagggaggagcagaggGACTTTGTCCCACTTTACCAGGACTTTGAGAACTTTTACACCAGGAACTTATACATGCGCATCCGTGACAGCTGGAACCGACCCATCTGCAGTGTCCCGGGGGCCAAGGTGGACCTAGTGGAACGTGTGTCACCTGACTACAACTGGACCTTTGActacacAGGCAAAGTGGTTGAAGGTGTAATAAACATGGGTTCCTATAACTACCTGGGCTTTGCTGAGAACACGGGTTACTGTGCTGACGCGTCCGCTGAGGTCACCATGAAGTACGGGGTGGGCGTGGCCAGCACCAGGCAGGAGATGGGTAACTTAGACAGACATGAGGAGATGGAGGAGCTGGTTGCTAAATTCCTGGGCGTGGAGTCGGCCATGGCTTTCGGGATGGGCTTCGCTACCAATTCGATGAACATCCCTGCCCTTACTGGCAAGggctGTCTAATCCTAAGTGATGAGCTGAACCATGCCTCTCTGGTCCTGGGAGCCAGGCTGTCTGGGTCCACCATCCGTGTCTTCAAACACAACAACATGCAAAGTCTGGAGAAGATGTTGAGAGACGCCATAGTCCACGGCCAGCCCAGAACACACAGGCCGTGGAAGAAGATCCTCATACtggtggagggtatatacagTATGGAAGGCAGTATAGTACGTCTACCTGAAGTCATAGCTCTGAAGAAGCGCTACAGGGCCTATCTGTACCTGGACGAGGCCCACAGTATTGGGGCTCTGGGGCCAGGGGGCCGAGGTGTGGTCGACTACTTTGGTCTGGACCCCCGAGACGTGGACGTCATGATGGGGACGTTCACCAAGAGCTTTGGTGCCGCTGGGGGCTACATCGGAGGCAGGAAGGAGTTGTTGGAGTACCTGCGCTCCCACTCTCACAGTGCGGTGTACGCCGCGTCCATGTCACCTCCTGTCGTGGAGCAGATCATCGCTTCTATGAAGTGCATTATGGGGGAGGACGGGACGACGCTTGgtcgTGATCGCGTGCAGCAGTTGGCAGAGAACACTTTGTATTTCCGTAGGAGACTGACAGAGATGGGCTTTATCATCTACGGAAACAACGACTCGCCCGTAGTTCCCATGATGCTCTACATGCCGGCCAAGATAGGggcGTTTGGTAGAGAGATGCTGAAGAGGAACAtcggggtggtggtggtgggcttTCCAGCCACACCCATCATTGAGTCCAGAGCACGATTCTGTATCTCTGCCGCTCACACCAAAGACATGCTCGACACGGCCCTGAGTGTGATCAGTGAGGTAGGAGACCTGCTGCAGGTCAAGTACTCCAGACACAAGAGACTGCCCTCTCTGGACTGAGTCGTCGACCATAGCATCTACGACCAGATACAAGACTGAACTGGACCACAGTGGTCTAGACCGGATCGGACCAGATTGGACTGGCAGTCTTCCACACCCAGAACCAAAATGTGCTCGCCTTGATGTCACAGAACCACTTTATTCATCTAACACAAGGTTTTAACTTTCACACGCCTGCCTTATTTTACCAGCAAACTCACTGCATCATGgcgaagaagaagaaaaaaactcggaaaacatttattttttcaaaCGATTATTTCTTACCTCTGTTTTGTCTTAAATAATGAAATGTTGGGTCTGCATCTTAATTTGTGGCATTTTGTTTCTGGAGGATTAGTAGACTGAGGACTGCTTATGTGTGCTTGTAGCTGCTTTATGTCATGCCTATGTCATGTcatctctgactgtgtgtgtttgggagaaACGGTGTGATTTGTAAAGACCAACCTAAATGTAGCTTACGAAGCTTTCGGAAGTATTTAAACAttttggaggagagatggggagttgaagaaaaacaacaagaataatcaacacaaacaaacaaactgatTTCTAAAGGTCATAAAACACACTGAGTTTCTGTTAGAAGTTTcccttaggtacagatctaggaccagcttACCCTCCACAAAACCTATCCTTACCCATTGGGGTTGAAATGTGTAACTGACCTTAGCACAGTGTCAAGGGGCAATGTTATCCTACTCTACTCAGTGATGGTATTGCTATGAAGTACAGTTTAGGAGTGCTTTGAGATGCATGTTTGGTGTAACCGACTCCTGGAGCTAAACTTTGCTGTTCTAACTTGCAGCCAGGAACCGTGTCTTACTTGAATCTCTAACTACGTTCTCTTTCCAAAGTATTTATGATTTTTATTTACAGATGACTATATCTCATAACAGGTCAGAGTGAGAGACGTTGTACCAAGGCCTTTACTTCCAGATGAGCTATGAGCACATCACTCCTCCTCGCTCGTATCCACTAGCCCTTGGTTCCAGGCTGTTTCAGCTGTAGatcctaaccacagatctaggatcagattattcTATCCCGATCCTAACGTTATCATTAGGTGGATGAACAACTATATGACCCAGTAGCGGTGGTTTGGGGGAAAACTCCACCCACTCCAGTAGAAAAAGTCTGGTATCCAGGGAAATGGATCTATCAGATGGGGGGGGGAGCAGACTTAGTCAAGACAGACTTAGTCTTAACCAAacgtgtgtgtgacagagagagttgTTTAATGTACAGATTTATTTATTCATTGTTTCcatggtttttttttttttcaatttggaaaaaatgtaacattttatCACTGGCAGCTCTGAAGCCATGTCCTGCATGCACATACCTTTACACCTCTCTGACTGATCACATGCCCTCAGTGCAATCACTACTGATGTGTATTTTATCGTTTGGCACACCTTAGCGCTGCATGCACAGTATGACATAGTCACTGACGCTGCTAGTACACCATGAAACAAGGTGCTCAACTGTACACACTACCtacatacaacactccttcctgtGGCTTTGTTTTAGTTTTTAAATACAACCTGAACTCATTCCAAAATTACTGATTTTATTGTATGAAATTGATATATCTTTGAAGACAAGGACATGTTCTGTttgtgttaaaaaaataaaaataaaaatctttCTTTGAGAGTTTATTAATATAAGTGACCTGcaaagagctggaggagagacatTTAAGATCATTGAAAATATTGAATATAGAGAACTAAATAGATTTTCATTCATTTTTCTTACTGTACAAAGAACTCTCACAATGACAAATGATTTGACTCATTCAGCTAGCTATTTTTTTGTTTCCTCAAAGGCAAAAAGTTAGAAGTAAATCTGCACTGGATGTGTGTAAAAATGTCTTTTGTATATTTCTATTTTTCTTGTTTGCACAAAGAGAAATACAACATGATACTGATGTGGTGTCAAAGTCTTAACGTCAAACTTCTTAAGATTTAAACACTGTCCTTATGCCTCATCTGTGGATGACCTGTCTCTTGGGTGAGATACAGGGTGTGAGTGGCCATTcaactgctttaaaaaaaaaatacatgtatgtgTTCTAACATAACTTGGATGTGCTACAAATAGTGCATAATAATAGCTGTACTTTTTTTGGATCAAAGAAAAATGCAGTGTTTGCTACATATCAGTGGATGACCTATTTGTACCTGTTTCACTCATGTTACGGACATCAAAATGTCATTAAAATAATGTAACAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837867 lncRNA downstream 161527 24685271 ~ 24685561 (-) True G1605410
TU1837856 lncRNA downstream 172233 24674646 ~ 24674855 (-) True G1605399
TU1837847 lncRNA downstream 180878 24665874 ~ 24666210 (-) True G1605390
TU1837837 lncRNA downstream 194798 24651984 ~ 24652290 (-) True G1605380
TU1837660 lncRNA downstream 332329 24513735 ~ 24514759 (-) True G1605214
TU1838812 lncRNA upstream 274116 25182847 ~ 25183049 (-) True G1606289
TU1838826 lncRNA upstream 295067 25203798 ~ 25204007 (-) True G1606301
TU1838829 lncRNA upstream 301565 25210296 ~ 25210670 (-) True G1606304
TU1838927 lncRNA upstream 474029 25382760 ~ 25395212 (-) True G1606398
TU1839139 lncRNA upstream 788720 25697451 ~ 25697658 (-) True G1606597
XM_021573699.2 mRNA downstream 2937 24792012 ~ 24844151 (-) False LOC110497546
XM_021573697.2 mRNA downstream 119570 24704456 ~ 24727518 (-) True LOC110497545
XM_036954481.1 mRNA downstream 119576 24704456 ~ 24727512 (-) False LOC110497545
XM_021573698.2 mRNA downstream 119610 24704456 ~ 24727478 (-) False LOC110497545
XM_036954479.1 mRNA downstream 119610 24704456 ~ 24727478 (-) False LOC110497545
NM_001124268.1 mRNA upstream 769476 25678207 ~ 25685719 (-) False dio2
XM_021573706.2 mRNA upstream 917059 25825790 ~ 25851285 (-) False ston2
XM_021573703.2 mRNA upstream 917059 25825790 ~ 25876073 (-) False ston2
XM_036954498.1 mRNA upstream 917059 25825790 ~ 25876073 (-) False ston2
XM_036954500.1 mRNA upstream 984493 25893224 ~ 25971396 (-) False foxn3
TU1838053 other downstream 2951 24810720 ~ 24844137 (-) True LOC110497546
TU1837685 other downstream 293118 24552538 ~ 24553970 (-) True LOC118941548
TU1837435 other downstream 640650 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 872982 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1702544 23141816 ~ 23144544 (-) True LOC110497482
TU1838926 other upstream 474029 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 769617 25678348 ~ 25686102 (-) True dio2
TU1840954 other upstream 921706 25830437 ~ 25833377 (-) True ston2
TU1841293 other upstream 1515300 26424031 ~ 26427303 (-) True G1608529
TU1841342 other upstream 1676207 26584938 ~ 26610983 (-) True G1608576

Expression Profile