RNA id: XM_021573737.2


Basic Information

Item Value
RNA id XM_021573737.2
length 6089
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110497570
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26669796 ~ 26680308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGACTAGCTCACATCAATAGATATTTGAACGAATACTCAGTCAGCCTGCAGCAGCGGCAAAAACGTAAGATTTTTGAGATTTTACTCCTCGCTAAATCTGATCATTGTTGTTATTACTATAACCCAGGGATGGAGAATGGACCGCTGGAATTTGCAAAATGAGATGACCCTTTATCTCCACATATTACTACATTTACATCACAGACATTATTGTCTGTTGGATATCAACCCTGAAGAGGAACCGTCATGGAGTCACTAGAAGCTACTGTGGAGGTGAAATGCTCTAAAGAGGGTCTGAAAAAGACAGTTACACAGACAGAGTGGGCAGCACCAGAGCCTACAACTGCCCAAACTAAAATGCCCCCTTCGGCTGATTCTGAGGGGGAGGGGTGGCACCAATGCCCACAACCTGAGGAGGACCAGAGTAGAACCACATGTGGTTCAACAGACAAGCCTGACTCAGGGAAACTAAGACAATTAGGGAAATCACCACGCCAATTACAGGATCAAGCCTGCAGTCATCCTCATTACAACGTATTAACATCATATCCACCACTGGGGAGACAGGCAGTTCCCTTTGCTCAACAGAAAACGGCAGATCGCTCGGTTTCTGCACTTCCGCTATCCCATGGCAACTGTGAAGGGCCCTCTCCTCAGAGGAGCGCCCCCAGTTTACCCGCGTCTCTTCAACACTGTTCCCAGTCAGGGATAGAGGAGCTATCCAAGGACGTGTGTAGTAAGCTGGAGCAGAAACAGCAGCAGAGGCCTGGGAAGTATGTTTGTGATTATTGTGGGAGGGCATGTGCCAAACCCAGCGTACTTAAAAAGCATATTCGCTCACATACTGGGGAGCGACCCTACCCCTGCGTTCCCTGCGGCTTCTCTTTCAAAACCAAGAGCAATTTATACAAACACAGAAAATCTCATGCTCACTCTGTAAAAGCTGGGACCGTGCCAATTTCAGAACTGGGTTCTTACAATGCCAACATAGAGGACCGGGAATCTttagaaggagaaggagagctaTACTCTGACGCTGAGCAGAGCTCTGACACGGATGATGACTATTCATCGTTCTTGGACTCTGTTTCAGTCGAGGAACCAGATAGCACCACTGCTGTGAAAGTACTGAATCTCATTGCCCAGAAACAGGGAGTTACATCAACATTATCTGAGGAGCGTTCAGCCAGGCTCCCAGAGATCAATGGTGCTCAAGCTCCAGCAGTTTCTCAGGTCAGTCGTGCAATTCAATCCAGCGCCATCAAGCAGAGGCTGGCACTCCGGCTCTCAGAGAAAAGGAGCAGTGACACTGAcacatctctctccctgcctAGCCAGGGAAGCAAAGGCAGCACAGACTCAGGCTACTTCTCACGCTCTGAGAGCGCAGAACACCAAACCGGTGGTCCTCCCAACACAAACGCCAAGTCCTATCAAGAGATTATGTTTGGGAAGTGTTACAAACCGAACCCGAAACAGGCCATAACTGTTGTGACTTGCACTACAGACTTAATAAGTGATCGTAAGTCTTCAGAGCGAGGTGTTTCCCGTGTATTCACACAAGAAAAGGAATCAATGATAGAATCGATCAGAATTAACACACATTCATTTACAAGGGAAGAAATTAAAGAGGCTCAACTAGAGCTCTCCGATTCTGGGCAGCTGGTGCGGAGCAACTCGATGCCCACGTCCTCAGCTGCGTGTCTGGACATGCCACAAGGCCTGCGAGGCAGCCACTCCTTTGATGAGAGGGCGTCCCCTGGAGGTATTAGGAGACTCAGGCGACAGGCTGCCTTTGAACACTCTGCACACGATGGACACACAGAACTTCCTGACCACTACGGAAACATCTCTGATATTTCCAACCTTGGAGTAGAGATGGAATTTGCGACGAGGAAACGACGGAAGGAAAACTGTatcagggaggaggaggatataGCAAGCCAGTATCACACAGACTACGACCACACTGAAGAGACGAGGGACTGTGATTCAAAGCAAGCCTCTCAAGGTGCTCTAACCACGACTCCTTCAGTGAAAGTACATGCCCAAAGCGTGAATACACAGGATAGAGCGCACTGTGATAGACTGGACATGGAAATGTTGGAAGACACCACAGAGAAGAGAGCTTTAGGTAATGTCATCTCTGTGATTCAACACACAAACTCCTTGAGCAGGTCGCACTCGGACGAGTCTTACAACCGCCAGAGACGAGAAAAGCCTTCCTCAATGGAAGTGGTGGAGCAAACCGAAACCCGAGATAAAAGGACTGAGATCATTGCACACCAATTGAGTGACAGTAGATTGTTAGATCAATCATATCAAATGACACCTAAGCTAGTCCGTCAGTCCAACATACAGGTCCCAGAGATCAGGGTGACTGTAGAACCTGACAGtccagagaaagagaaagcagcGGAGGTGAAACAGGTGAAGGCGAAGGAGCCCGATAGATATGTAGAGGAGTTCCAATGGCCTCAAAGAAGTGAAACCCTGTCTCAGTTCCCCCCAGaaaaactccctccaaagaaGAAGAGACTGCGCTTAGCTGACTTGGAGCACTCTTCTGGTGAGTCTAGCTTCGAGTCGGCCTGTACGAGCCTCTCCCGAAGCCCTAGTCAGGATAGCAACCTATCCTACTGCTCCAGCTTCTCGTTTGaccgagaagagagagagcgagagttaaTCCCCAAGCCAGCTCCCCTGGCAGCTAGACAGGATGAGTTTGGAAAAGCGTTGGAGTTCTTAGCTGTGCCAGGAAGCGCccactccctctctgtcctgaACCAGCGTCAACAACATGAAATGAGACGCTCCTCTTCAGAACAGGCACCATGCAACTCTCAGCGCAGAGAGCTCCCAGAGGTCCGAAGCGTATCATTTGACTACGGCAGTCTCTCTCCAATGGCCAAAGTTAGACATGCGGAACTCGGCGCCAGTTACTCAGAACCCAGACGGGGTAACTTGGTAAGACAGGCGTCCTTGAATGTTGACCCTGAATTTACACATCCAGTCCTTCCGCTAAATATTCTTCCTCAGTACCTCAGCAATGCCCTGTCGCTCTCAACCACTTCTCTGCTCTCGCAGTCTCTGCCAATGTTTGCCCCTCAGCCACCACACTCCGGTCTCTTAGTTCCTGTTAGAGTACAGGCTCACGTGCCATCTTACGGTAGCATTACATACACCACTGTGTCACAGGTTGTAGAGGATCCATACGAAAACTCTCTCACTTCTCACTTTGCACATTTATCCACAAATTTAGATGCGTTATTAGGACACCCCCGAGGACTGTTGACCAACAACCCAGCCCAGATTCAAGTTCTAGATCTGTCACCAGCTAAGTTTAAGACAGGCATCCCACTAACCCTGACCTCCAGGACTATCTCCACCACCAACTGTGGATCCAGTGGTGGATCCAACAAGCGCATGTTGTCTCCGGCCAGCAGCTTGGACCTGTTCACGGAGGTAAAACAGCAGAAACGTGTCAAAGAGGAGAAAATGTACGGTGAGATAGTGGAGGAGTTGGGTGCTGTGGAGTTAGGGAACTGTAATGTGACCGAAGAGAGCAAGTACAGTTTAAAGACTGAGTTTAAAAGTGACACCAACCAGGGAGCATCACTGTCAGGCCTTTCTTCTATATCCTCTTTGTCTGTGTCATCCTCACGTCATTCTCAAGACGACCGAGCAAGTGAAAGCTTCATCTCACCTCAGCAACAAGGGTCAGAATGTCCTGATTCCCCTATGGACAACTCCCCAACTGAAACACGCCTACATCCACCCTCTCTGATTTCCCTAAATGATTTCAAAGAGTCTGGCAAGGACAGCAAGGCACAGATGGAAATGATGGTGCAGGTAGTCAAAGGTCAGGGCATCCTCATCTCTGACGGTGAAAACACCAAACTGATATCTCAGTTTCCAAGTCTTCGCACAACGACAGTTGTGAGTTGGTGCTATCTGAACTACACCAAGCCAAACAGCACTCACAACACTTCTCCTATGTCCTCTATGTACACTACGTGGTGCGTCAGTTCCCATAACCCCAACCCTCCTAACCTCAACACCAGTGCAACCCTGGCTCTGCTCCGCTCCAAACAGAAGACCAACACATGGGTGTACACCATGGCTGCCATGTACCAACctgggactgggaaactggtctcCTCCTCACTCTTATGGAGGCAGAGGCTTGAGCTGCTACAGAGCAAACCGGAGCTCAAAGAGCTGGATGTGATCTCCTGTGGAAGGAAAGTGAAGGATGCCAGCTGCAGGGTAAAAGCAGCGAAGGAGGACTGGAAAGACATGGAGGTCTCCTCGAAACAAACAGCAGcgccaacaccaacaccaacccaGATCAAAATCTTTGAAGGAGGGTTCAAGTCCAATGAGGACTATGTGTACGTGAGGGGCCGAGGCCGAGGAAAGTATATCTGTGAGGAGTGTGGCATCCGCTGTAAGAAACCTAGCATGCTAAAGAAACACATACGCACCCACACTGACGTCAGACCCTACGTTTGCAGGGTCTGCAACTTCGCTTTCAAAACGAAAGGAAACCTGACCAAGCATATGAAGTCAAAGGCTCACATGAAGAAGTGTCTTGAGCTTggtgtgtcagtcacagtggatgATACAGAGACACAGGAATCTGATGACATCCAGCAAGACTCGAAGACTGGGGTCTTGAGCTCAGCCAAACACCAGTTCTCAGACGCAGACGACTCCGATGGCATGGATGAAGAGATAGATGACATCGACGAAGATGACGATGATGATTACGACGGTGGCTCCACTCCAAAAATCCACTCCCGGAGCACCAGCCCTCAGCCCTGTGACATAGCCTCTCCGTCGGTCACAGCTACCACCATCACCCAGGTTGTGTCGTCGGCTCTCCATGGCTGTACCCTCAGTACCTTCCGTTCTCTCCCCAGCTGCCTCACCAACTCCATCGTGCCTCCACCGTGCCATCCCCACACCTCCATCTCAGGCAAGAGGACAGGGCCAGACCGGAGGACTGTCTTGGCCTCCAGCCTGGACAaggagcagagtgagagagagaggcttgtgGAGGAGGACTGTAGCCTGGCCATGCTGTCTCCTGACCAGGGTTGTCTGTTCACCGGTCTGCTGTCCACTGGCTGGGAGTCCCCTCTGAGGGAACGGTCCCCCTCCCAGCTCCGCTACCCATCACCCCGTAGAGACCTCTCCCCCCGGGGTCGCTTCTCACCTCGATGGGACACCTCCCAGCTGAGGCCCAGCTCCCCCAACCTCACCCCCATCCAGCACCTCTCCCCGGCCTGCATGGAGAGGCCCCTGTCCCCAGGCGGAGTGGACCTGCCTGGGAGGAGGGAGCCATCGGCCCGGGGCAGACAGAGGGTGGTGCTGAGGGCTGTGTCTCCACGTAGAGGGGGCTCGCAACACAGAGGGTCTGGCGATAAAACCAAGCGACAAGCCAAGGCTGAACTTGTCGACAAGGGAGGATCCATTGAAATGGATTTGGATCAGAGGAGAAGCACACTCCCCAAACTGCCTGGTCCCTACATCTCCAGTTGTACCCATCATAACGTCCTCAGCCACCTTCCCCTACACTCTCAGCAGCAGGCTCAAACTCTACTCCCCATGGTCCCTATCGGGGGGATCCAGGTACTGCGCACTTTGCCCTCCTGCAGCTCTGACCGGACCCATCTGTCAGCCCTGTCCCATCAAAAGACTGAGCTCCACCAGGACAGCAATAAGGAGGGATCTGTCTGTGTGGCGGGCTTCGGTGCAGAGGACTCAGTAGcccagcagcaggagaaggagtGGGAAAAGGAGAGGCCGTCCCCCCACCAGACACCCTGGGACTCTGAGGAGGAGAAAgatcctgtctctgtcctcacgGTCAGGGACCCTAAGCAGGAAGAGGGTCTTCAGACCTGCACCAAGGCCATCGCCTCCCTCAGGATCACTTCTGAGGAGCATCTATAGACTGGGGTTGcatagggctctggccaaaagtaatgcactctatagggaatagggtaccatttgggacatacgctacatgaccagaagtatgtggacacctgctcgtctaacatctcattctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841438 lncRNA downstream 55372 26614211 ~ 26614424 (-) True G1608672
TU1841339 lncRNA downstream 57572 26611107 ~ 26612224 (-) True G1608574
TU1841340 lncRNA downstream 59640 26609397 ~ 26610156 (-) True G1608575
TU1841419 lncRNA downstream 88439 26580826 ~ 26581357 (-) True G1608653
TU1841409 lncRNA downstream 97189 26572360 ~ 26572607 (-) True G1608643
TU1841483 lncRNA upstream 18401 26698692 ~ 26963299 (-) True G1608712
TU1841552 lncRNA upstream 86560 26766851 ~ 26767159 (-) True G1608763
TU1841598 lncRNA upstream 175952 26856243 ~ 26857489 (-) True G1608804
TU1841663 lncRNA upstream 355011 27035302 ~ 27037775 (-) True G1608863
TU1841706 lncRNA upstream 383436 27063727 ~ 27065477 (-) True G1608904
XM_021573729.2 mRNA downstream 8066 26655113 ~ 26661730 (-) True LOC110497567
XM_036954524.1 mRNA downstream 8916 26655113 ~ 26660880 (-) False LOC110497567
XM_021573730.2 mRNA downstream 9267 26655013 ~ 26660529 (-) False LOC110497567
XM_021573734.2 mRNA downstream 14886 26651469 ~ 26654910 (-) False LOC110497568
XM_021573740.2 mRNA upstream 10838 26691129 ~ 26706187 (-) True fuca2
XM_021573744.2 mRNA upstream 43391 26723682 ~ 26732831 (-) False LOC110497574
XM_021573743.2 mRNA upstream 43391 26723682 ~ 26732914 (-) False LOC110497574
XM_036954527.1 mRNA upstream 43391 26723682 ~ 26735552 (-) True LOC110497574
XM_021573754.2 mRNA upstream 103207 26783498 ~ 26791128 (-) True LOC110497579
TU1841342 other downstream 58813 26584938 ~ 26610983 (-) True G1608576
TU1841293 other downstream 242493 26424031 ~ 26427303 (-) True G1608529
TU1840954 other downstream 836419 25830437 ~ 25833377 (-) True ston2
TU1839109 other downstream 983694 25678348 ~ 25686102 (-) True dio2
TU1838926 other downstream 1274584 25382760 ~ 25395212 (-) False G1606398
TU1841604 other upstream 231106 26911397 ~ 26912437 (-) True shprh
TU1841644 other upstream 257579 26937870 ~ 26941380 (-) True G1608844
TU1841799 other upstream 515457 27195748 ~ 27201735 (-) True G1608988
TU1841803 other upstream 525939 27206230 ~ 27207354 (-) True G1608992
TU1842195 other upstream 1198170 27878461 ~ 27878816 (-) True nkx2.9

Expression Profile