RNA id: TCONS_00048836


Basic Information

Item Value
RNA id TCONS_00048836
length 117
RNA type rRNA
GC content 0.49
exon number 1
gene id XLOC_024776
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 31318012 ~ 31318128 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTACAGCTATATCACTCTGCAGcctaagaccggttactcactgaagctaagaagGGCTGAGCCTGGTTGGAACTTGGATGGGAAACCGCagaggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179086

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049406 lncRNA downstream 1763796 29549404 ~ 29554216 (-) True XLOC_024765
TCONS_00048806 lncRNA downstream 2148751 29167487 ~ 29169261 (-) True XLOC_024757
TCONS_00049405 lncRNA downstream 2433883 28879331 ~ 28884129 (-) True XLOC_024750
TCONS_00049404 lncRNA downstream 2941017 28371448 ~ 28376995 (-) True XLOC_024743
TCONS_00049403 lncRNA downstream 3387079 27927607 ~ 27930933 (-) True XLOC_024742
TCONS_00049407 lncRNA upstream 182179 31500307 ~ 31503420 (-) False XLOC_024780
TCONS_00049408 lncRNA upstream 182179 31500307 ~ 31503469 (-) False XLOC_024780
TCONS_00048840 lncRNA upstream 183705 31501833 ~ 31503390 (-) True XLOC_024780
TCONS_00048853 lncRNA upstream 586628 31904756 ~ 31907603 (-) True XLOC_024787
TCONS_00048864 lncRNA upstream 1200271 32518399 ~ 32530719 (-) False XLOC_024794
TCONS_00048835 mRNA downstream 146064 31165878 ~ 31171948 (-) True XLOC_024775
TCONS_00048833 mRNA downstream 199089 31099908 ~ 31118923 (-) False XLOC_024774
TCONS_00048834 mRNA downstream 199089 31103051 ~ 31118923 (-) True XLOC_024774
TCONS_00048830 mRNA downstream 888262 30423120 ~ 30429750 (-) True XLOC_024771
TCONS_00048828 mRNA downstream 888405 30385691 ~ 30429607 (-) False XLOC_024771
TCONS_00048837 mRNA upstream 70771 31388899 ~ 31396479 (-) True XLOC_024777
TCONS_00048838 mRNA upstream 103125 31421253 ~ 31423493 (-) True XLOC_024778
TCONS_00048839 mRNA upstream 106722 31424850 ~ 31433512 (-) True XLOC_024779
TCONS_00048841 mRNA upstream 228700 31546828 ~ 31629095 (-) False XLOC_024781
TCONS_00048842 mRNA upstream 276968 31595096 ~ 31629095 (-) True XLOC_024781
TCONS_00048832 other downstream 273805 31044110 ~ 31044207 (-) True XLOC_024773
TCONS_00048831 other downstream 478749 30839147 ~ 30839263 (-) True XLOC_024772
TCONS_00048820 other downstream 1854061 29430345 ~ 29463951 (-) True XLOC_024764
TCONS_00048813 other downstream 1922806 29393632 ~ 29395206 (-) True XLOC_024762
TCONS_00048812 other downstream 1934642 29381862 ~ 29383370 (-) True XLOC_024761
TCONS_00048845 other upstream 359951 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048850 other upstream 572145 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048855 other upstream 702753 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048871 other upstream 2937017 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048891 other upstream 3773784 35091912 ~ 35095112 (-) False XLOC_024824