RNA id: XM_036954556.1


Basic Information

Item Value
RNA id XM_036954556.1
length 4369
RNA type mRNA
GC content 0.51
exon number 20
gene id syne1b
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27213284 ~ 27350889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTTAGATGCATTACATTAGGTAACACCTCTACATCACTGCTACCTCTTCATTAATGTTCTGCTAAGTCTATGGATATTGCCTAGTACTGCTTGTTGTctATCCCTTCGgcagaagcaggtgagtgagaaGCTGAATGAGTGGGCCGTGTTTAACGAGAAGAACAAGGAGCTGTGTGACTGGCTTACCGACATGGAGAGCAAGGTGTCCCAGAATGGAGACATCAGCATTGAGGAGATGATCGAGAAGCTACGCAAGGACTACCAGGAGGAGATAGCGGTGGCTAAGGAGAACAAGCTGCAGCTGCACAAGATGGGTGAGCGCCTGGCCAGGGCCAGCCACGAGACCAAGGCCTCTGAGATAGAACACAAGCTCAGCAAGGTGGGCGAGCGCTGGCAACACCTGCTGGACCTCATCGGGGCCAGAGTGAAGAAGCTGAGGGAGACTCTGGTGGCAGTGCAGCAGCTGGATAAGAACATGAGTAGTCTGCGGTCCTGGCTGGCCCACATAGAGACTGAGCTATCCAGACCCATCGTCTATGATACCTGTGATTCCCAGGAGATACAGAGGAAGCTGGACCTGCAGCAGGAGCTTCAGCGTGACATAGAGAAGCACAGTACGGGTGTGGCGTCTGTGTTGAACCTgtgtgaggtgctgttgcacgaCTGTGACGCTTGTGCCACGGACACAGAGTGTGAATCTATCCAGCAGGCCACTCGCAGCCTGGACCGCCGATGGAGGAGCATCTGTGCCTTGTCCATGGAGAGAAGGCTCAAGATTGAAGAGACATGGCGTTTGTGGCAGAAGTTCTTAGAGGACTTTGCACGTTTTGAGGAGTGGCTTGTGACCTCAGAGAAGACTGCTGCTCTGCCCAACTCTTCAGGCGTGCTCTACACTGTGGCCAAGGAAGAACTAAAGAAGTTTGAGGCATTCCAACGTCAGGTCCATGAGAGTCTGACCCAGCTGGAGCTGATCAATAAGCAGTACCGCCGTCTGGCCAGGGAGAACCGCACCGACTCCTCCTGTCGCCTCCGGGAGATGGCCCACGACGGGAACCAGCGCTGGGACAACCTGCAGAAGAGGGTGGCCTCCATCCTCCGCAGACTCAAGCACTTTATCAGTCAGCGTGAGGAGTTTGAGACGGCCAGAGACAGCATCCTGGTGTGGCTCACGGAGATGGACCTGCAGCTCACCAACATAGAGCACTTCTCAGAGTGTGATATCCAGGCCAAGATCAAACAGCTCAGGGCGTTCCAGCAGGAAATCTCTCTGACCACTGGGAAGATTGAGCACATCTTCCACCAGGGTGAGGTGCTGCTAGAGAAGAGTGAGCCTCTGGATGCCGCTGTTATAGAGGAGGAGCTGGAAGAGCTGCAGAGATACTGCCAGGAGGTGTTCGGACGTGTGGAGCGCTACTACAAGAAGCTCATACGCCTACCGctAACAGGTGACGAGTACGACGTGTCATTCTCGGACCGGGAGTTTGAACTAGACGAACCTGGGGACCTGTCCAGCATTCCCTGGAGTGAGCGTCTGGGAGACTGCCTGATgtcccctctaccctccctaaGCCACTCTGCTTCCCTGGCTGCCCCTCTGCGGACTGGAGCTGAGCGCTCGGGCAGGGACACCCCAGCCAGTGTGGACTCCATCCCCCTGGAGTGGGACCACGATTACGACCTGAGCCGGGGGCTGGAGAGCGCCAGCAGGGCCCTGGGCCTGGCGTCTGAGCAGGGGGAGCACGGAGATGAGGGGAGCTACCAGGGATCAACTTCTGCCTCTGCTCTGTCAGATGTAGTGATCCCAGAGAGCCCTGAGGCCTTTGTTAAACTAACTGAACAAACCCTGAGGTCCTTGGATGGAGAGGGAGGTACCCTGGAGACTCACATACTACAGTTGGACAAGGTTCTGGACACAAGCCGGTTCCACCtgcaacagacagagaacataATCCGCAGCCGCACCCCGACTGGCCCCGAGCTGGACGCTTCATACATGGGATATATGCGTCTGTTGGGCGAGTGTCGTGGTAGTATAGACACGGTGAAGAGGGTGGGCTACGAGCTGAAGGGGGAGGAGGACAAGGCCTCAGGACTCGCTGACCCCATTGGTGGTGATTCACAAACAACAGGTGTGATAGAACGTTGGGAGTTGCTGCAGGCCCAGGCCCTCAGTAAAGAGATGCGTCTGAAGCAGAACCTTCAGCAGTGGCAGCAGTTCAACTCTGACCTCAATGCCGTGTGGGTGTGGCTGGAGCAGGCTGCGGCGGAGCTAGAGCAGCAGCGGAGCCTGGACCTCAGCACCGACATCCAGACCATGGAGATGCGCATCAAGAAACTCAAGGAGCTGCAGAAGGCTGTTGACAAGCGTAAGGCCATTGTGCTATCCATTAACCTGTGCAGTGCAGATTTTGTCCAGTCTGTCACAGTGGAATGCCAGGACCTGCAGGCCAGGTTGAAAGAGATGAACAACCGCTGGGACAGACTTGGCACCTCTCTGGGGGAGTGGAGGGCAGCACTACAGAATGCCCTCATGCAGTGTCACGACTTCCATGAGATGAGTCACGGCCTGCTACTGTGGCTGGAGAACATTGACCGCAGGAGGAACGAGATCGTTCCCATTGACCCCATCCGGGACAGCGACACCCTCCACGATCACCACAAAACACTCATGCAAATCCGTGGTGAGTTGCTGGACTCCCAGAGGAAAGTGTCGTCCCTGCAGGACATGTCCCTACAGCTGCTGGTCAACAGCGAGGGCTGCGACTGTCTGGAGGCCAAAGAGAAGGTGCACGTCATCGGGAACCGCCTCAAACTGCTCTTCAAGGAGGTGACCAGAGacctcagagagctggagaggattCTGAACATCACTAGTAGCCAACAGgaTCTGTCTTCATGGTCGTCGGCTGATGAGCTGGACACCACCTCTGGTTCCATTAGCCCGGTGTCGGGCAGGAGCACGCCAAGTCGCCGTCGATCGCAACGGGGCAAATGTAGTCTGTCCCAGCAGACCTCTGGACCCTCTGTGAGCAGTCCACACAGACCACACAGGTCTCCCAACGTCGCTGGGTCCGCTTCCTCCCCTTCTGACGCCGAGGTGATACCATCGTCATTCCTGTACCGCGTCCTGTGCGTGGCGGTGCCCCTCCAgttgctcctcctcctgctgctggtgGGCATGGCCTGCCTGGTGCCAATGTACGAGGGGGATTTCAGCTGCAGCCAGTCCAATAACTTTGCCCGTTCCTTCTACCCCATGCTCAAATACACCAACGGGCCCCCTCCTGTGTAGTCTATCATGACAGACCAAACATTTGGTTCTGGGTGCCGAGCGAGATTACTTCCGGTATATTCCAGCCTGGCCCTGGCATGGAGACGAACCTGAGGAGGACAGTTGAGGTTTTTGAACATCATCACAGTCTGGGGTTTTTAATTGTATTGGAACTGTTTCAATGCTCCACTACCTTGCAGCTTCCATGAAGAATAGACAGATAAGCAATGCCGTCATTCGGCTccttgtgccccccccccccataagcaAGAAACATAGGAACCCAAATCTCAAACTGATCTTTGGACGTGTCTTCTTTGTGTGGATGGAGTACAGCAGCTGTCTTAACTTATCTTTTGTGGCTGATAGAATCACTCATGTCATCTTTTAGTTGTCTGTCATGTATAGACtggaaaagcattttttttggaGCAGCACATGTAAGAACCAAAAATGTTTCTGACTGCAGTCAGTGGATATCAACTGGATGCTGGAACTGTTGGGTTGAAACACAGCTGCCATTTGACACCTAGTTCAATACAGAACATGTAACCTGTGAATTTGCCTGTTGTAACAATTGAAAATTTGGAAGATAACATTTTAAGATGACTTTCAttgcatttattttttacatgtattttggCATGCAGTTATAATCTTTGATTTTACTTATGCTTTTACTTGATACGTGTTGAATAGTTTATCTTTTAAAAATATGAACTATACTGTGTGTGTAAGAATCTATTTAATCTGAATTGTGTTTTGAGTGGGTAtgtaaaacaaatgaaataatGAGAGTTGTTTGCTCTAAACTGTTTGACTGTATAAGAAACCTTTACAAATATGAACTGTATGGAAATAATGTACTgaacacattttgttgttattttTCTAATTGAAAATATGGAAATGATCTACTTACTATTAATCAAAACTATAACAAATTATAAAACAACGGTATATTTTCTATGGCTCTGTGCGTTCAGTATTACATGTATAACAGTCCAGGATTACTTAACATGTTCTGTACATAATATAAATGTATATCTATAATGTATATCTGAGCCTAAATCACAAATATTGAATGCCAAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841706 lncRNA downstream 147807 27063727 ~ 27065477 (-) True G1608904
TU1841663 lncRNA downstream 175509 27035302 ~ 27037775 (-) True G1608863
TU1841483 lncRNA downstream 249985 26698692 ~ 26963299 (-) True G1608712
TU1841896 lncRNA upstream 147462 27384477 ~ 27387965 (-) True G1609062
TU1841920 lncRNA upstream 180927 27417942 ~ 27418188 (-) True G1609081
TU1841921 lncRNA upstream 181392 27418407 ~ 27418633 (-) True G1609082
TU1841950 lncRNA upstream 234744 27471759 ~ 27472034 (-) True G1609103
TU1841952 lncRNA upstream 236994 27474009 ~ 27474405 (-) True G1609105
XM_021573782.2 mRNA downstream 40100 27168907 ~ 27173184 (-) True LOC110497591
XM_021573781.2 mRNA downstream 52269 27155132 ~ 27161015 (-) True LOC110497590
trnal-uaa-59 mRNA downstream 59584 27153618 ~ 27153700 (-) True trnal-uaa-59
LOC110498695 mRNA downstream 73827 27131709 ~ 27139457 (-) True LOC110498695
XR_002469689.2 mRNA downstream 300816 26892669 ~ 26912468 (-) False shprh
XM_021573794.2 mRNA upstream 158835 27395850 ~ 27414739 (-) False ahi1
XM_021573795.2 mRNA upstream 158835 27395850 ~ 27414739 (-) False ahi1
XM_021573796.2 mRNA upstream 158835 27395850 ~ 27414739 (-) True ahi1
XM_036954568.1 mRNA upstream 187811 27424826 ~ 27439893 (-) False LOC110497599
XM_036954567.1 mRNA upstream 187811 27424826 ~ 27439896 (-) False LOC110497599
TU1841803 other downstream 5930 27206230 ~ 27207354 (-) True G1608992
TU1841799 other downstream 11549 27195748 ~ 27201735 (-) True G1608988
TU1841644 other downstream 271904 26937870 ~ 26941380 (-) True G1608844
TU1841604 other downstream 300847 26911397 ~ 26912437 (-) True shprh
TU1841342 other downstream 602301 26584938 ~ 26610983 (-) True G1608576
TU1842195 other upstream 641446 27878461 ~ 27878816 (-) True nkx2.9
TU1842362 other upstream 999581 28236596 ~ 28269145 (-) True plekhh1
TU1842983 other upstream 1405273 28642288 ~ 28650064 (-) True crip1
TU1843094 other upstream 1487240 28724255 ~ 28731546 (-) True mideasb
TU1843130 other upstream 1552406 28789421 ~ 28790413 (-) True G1610194

Expression Profile