Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004660 |
| length | 2779 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 17 |
| gene id | XLOC_002493 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 600164 ~ 641609 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0050796 | regulation of insulin secretion | biological_process |
| GO:0060285 | cilium-dependent cell motility | biological_process |
| GO:0060287 | epithelial cilium movement involved in determination of left/right asymmetry | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-061103-253 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cilium-dependent cell motility; epithelial cilium movement involved in determination of left/right asymmetry; and regulation of insulin secretion. Predicted to act upstream of or within cell differentiation. Predicted to be located in nucleus. Orthologous to human RFX3 (regulatory factor X3). |
| ensembl_id | ENSDART00000041236 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005967 | lncRNA | downstream | 51963 | 546336 ~ 548201 (-) | True | XLOC_002492 |
| TCONS_00005741 | lncRNA | downstream | 51964 | 546202 ~ 548200 (-) | False | XLOC_002492 |
| TCONS_00005966 | lncRNA | downstream | 178511 | 415997 ~ 421653 (-) | True | XLOC_002491 |
| TCONS_00005965 | lncRNA | downstream | 178513 | 415997 ~ 421651 (-) | False | XLOC_002491 |
| TCONS_00005964 | lncRNA | downstream | 178513 | 415997 ~ 421651 (-) | False | XLOC_002491 |
| TCONS_00005968 | lncRNA | upstream | 15442 | 657051 ~ 657406 (-) | True | XLOC_002495 |
| TCONS_00005742 | lncRNA | upstream | 781632 | 1423241 ~ 1426474 (-) | False | XLOC_002499 |
| TCONS_00005969 | lncRNA | upstream | 783119 | 1424728 ~ 1433140 (-) | True | XLOC_002499 |
| TCONS_00005743 | lncRNA | upstream | 854422 | 1496031 ~ 1519871 (-) | True | XLOC_002500 |
| TCONS_00004673 | lncRNA | upstream | 899654 | 1541263 ~ 1544095 (-) | True | XLOC_002501 |
| TCONS_00004659 | mRNA | downstream | 226589 | 360237 ~ 373575 (-) | True | XLOC_002490 |
| TCONS_00004657 | mRNA | downstream | 257600 | 323401 ~ 342564 (-) | True | XLOC_002486 |
| TCONS_00004655 | mRNA | downstream | 277395 | 311722 ~ 322769 (-) | False | XLOC_002485 |
| TCONS_00004656 | mRNA | downstream | 280011 | 311917 ~ 320153 (-) | True | XLOC_002485 |
| TCONS_00004654 | mRNA | downstream | 290270 | 304596 ~ 309894 (-) | False | XLOC_002484 |
| TCONS_00004662 | mRNA | upstream | 2965 | 644574 ~ 690170 (-) | True | XLOC_002494 |
| TCONS_00004663 | mRNA | upstream | 441352 | 1082961 ~ 1133162 (-) | False | XLOC_002496 |
| TCONS_00004664 | mRNA | upstream | 468194 | 1109803 ~ 1180314 (-) | True | XLOC_002496 |
| TCONS_00004665 | mRNA | upstream | 546044 | 1187653 ~ 1258405 (-) | False | XLOC_002497 |
| TCONS_00004666 | mRNA | upstream | 546044 | 1187653 ~ 1276046 (-) | False | XLOC_002497 |
| TCONS_00004658 | other | downstream | 260137 | 339912 ~ 340027 (-) | True | XLOC_002487 |
| TCONS_00004640 | other | downstream | 523973 | 73450 ~ 76191 (-) | True | XLOC_002475 |
| TCONS_00004639 | other | downstream | 525774 | 72433 ~ 74390 (-) | False | XLOC_002475 |
| TCONS_00004703 | other | upstream | 2225111 | 2866720 ~ 2875735 (-) | False | XLOC_002517 |
| TCONS_00004704 | other | upstream | 2226869 | 2868478 ~ 2875735 (-) | True | XLOC_002517 |
| TCONS_00004722 | other | upstream | 2864931 | 3506540 ~ 3506654 (-) | True | XLOC_002529 |
| TCONS_00004723 | other | upstream | 3127042 | 3768651 ~ 3768766 (-) | True | XLOC_002530 |
| TCONS_00004736 | other | upstream | 4376949 | 5018558 ~ 5020500 (-) | False | XLOC_002543 |
