RNA id: XM_021573807.2


Basic Information

Item Value
RNA id XM_021573807.2
length 3012
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110497601
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27512861 ~ 27522127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCGCCCTCTGACACACAGTAATGATAAATAATGGTGTAACAGCCTACAGTTTTCTTGacattttgtttttattattGTGACAGGCTCACTATTTATTTTGGCGGGACGCCTTACCGGACCGTACCGCCTTACCTTCACCCATGGGGTTAGTGAGGTTTACGGTAGGGACGTCCCAAATATCCCGGATAGCACTGTTGAAGTAGTGGGGGCGGGCCGTTACTAACCAGTGCACGGCGCAGGAGTTCTGGCAACAGCTACAGCGGAGGATTGGAGCATAGGAAAACTGCCAGCGAAATAACAACAGAGAAAGATAGCTCTCGGAATACAAAGATGGCAGTGAATGTGCACGCCACGTCTGTGTCCTGTGACACCCTGAGCAGACATGACATGCTGGCCTGGCTCAACGATTCCCTACACCTCACCTACACCAAGATAGAACAGCTCTGCTCGGGTGCAGCGTACTGTCAGTTCATGGACATGCTGTTCCCAGGCTGTGTCCTGCTAAAGAAGGTTAAGTTCCAGGCCAAGTTGGAACATGAGTTCATACACAACTTCAAAGTTCTCCAGGCTGCCTTCAAGAGGATGGGAGTCGACAAAATAATTCCTGTCGAGAAGCTCGTAAAAGGAAAGTTCCAGGACAACTTTGAGTTCGTGCAGTGGTTCAAGAAGTTCTTCGACGCCAACTATGATGGGAAGGAGTACGACCCTCTACAAGCCAGACAGGGGCAAGACATGGCTCCCGCCCCCAATCCAGGTGATCACTTTTCCCACAGACCAAAGAGAACTCATGGTCCTCCAGGCCCTCAGAGGATGTCGCCCACAGTGCCCAAGATAATGCCCGCGCCCCAGAGGGTGCTGAACACCACCGTGCATGTGAGGAAGACCCCGGCTCTGGCGCGGAACGGGGGCAGCGACGGGGAACTCATGGAGCTGAATCAACAGTTGATGGAGCTGAAGTTGACAGTGGACGGACTAGAGAAGGAAAGAGATTTCTACTTCAGTAAGCTGAGAGACATTGAGCTGATCTGTCAAGAACACGAGAGTGACACCAACCCTCACCTCTCCAGGATCATGGACATTCTCTACGCCACAGAGGATGGCTTTGCTGCACCAGATGATGACGAGATTGATGAACAGGCCCACTTGGACCAGGATGAATACTGAGCCTGTTATACCTTCTGTCcatatcccccctctccctcgtctaaactctccatccatattcaccctctctctgcctctctcctttgtccctctctctgtttctctctctctctctctctctgtctctctctctctctctctctctcctttgtcctTCTTTTTGCACACTATAAATACCTCTATCctgtccctgttctctctctcttttcctctcttcctctctcttcatatTTATATATGTTTGTCTCCCCCCTTCCCCTGGGCTATCTACTGTACATACACCTCTACTTCTCAGTGTCCTAAGctactcctccctcccccctccccaatgACACAGTAGAGGCAACAATAACAGAACATATCCTAGTCGTTCCAGCATGGCACATAGTATAACACAGAGAAATGAACAAAACCAATGTGATATTAATGGGGATGTTAGGCCTACACAATTCATTCAGAGTTGTAAAtatgattttttatttaatttaaaggAATGGTTTTGAAATGAGGTAGTTGTCAGAATGCATTTGTTAGTTTGTTTTTTGGTTTGACTCGTGCTTTTTTGAAACCTCATTTTGGGTTTGTTCCAGAGTATAGAAAGCACCTTGTGCATGTTACTGTATGACAGGTTACCCATTACCACAAGAGTCATACTTAGACTCTAACAAAATGGTCTATGACAACAAATTGTATTTCATTTGTCAATACTTTCTTATTTACTGATTTGATTTAACAAATAGTCGAACAATTGATGCAAAATGTATGAATATTAAACAATGCTGTCATTTGTGCTGATGGCAGTGAAATAGCttaagaagctttttcctttagtTGATGGCATGTGGTAACATCAAGGGAAAACACATAAAAAGTGATCATTTAGGGCATAGGATATGATCAATGCTCTTTGACTGTACTCATTCTTGATTAGCTGTATCTGAGCATGAGGATGTTATAAATTGACAGTGAATAATGGGCAATATATTTGTCAACTATTTTATGTGTAGATTTTGTCTTCAGTCAGAAGTGTCTGGTTTAAATGCCATGGTATTTATTATGTATAGTGAGTTTGAACTTCATTTGGTATTAACAATACCTGAGGTACTATGTAGGCTGACATTATGgcagtaaaatatttttttacatttaactgtAAAAATGTGTTCTTTGAAGCTGGAATCCGTAATGGTGAAACTGACACGTCTGTTTGCGATATATACAAAAATGCCAAAAAGAAGTTACTTCAAACAACgaacactgttttttttttctccacgaTGCTGGATGCTCCTCCCtttcataaataaaacaataacaaaCGTGCTGGAGGAGAACAGTGGTGCTGTTTTCCCATATGCGGATTTCAGCTTTAAAAGAGCCCGAAAAAAAATGATTTACTTTGATTTGATCATATCACGTTTCTGCTGCTGATTTTGCTATGTTTGTACTTTTGGTTTGCTATAATATAttgctcagctgtagtcttaggAATTGCAGGTTGAGTTTAGTGAACAGTGAAGTCAgagttacgtcccaaatggcaccctatttcgtGTATGCTgtgcactactggtcaaaagcACTGcgccatatagggaatagggtgccatttgggacacacagagTTAGTTAGGGGTCTATGACCAGTTCAAAATGATGCTGGTCGTCATGAGCATCATAAGGAATATAAGTCATTTCCCCTGTACTACTGCCTTTACAATGCAAATAGCCATCTGCAATAGAAATTGACCTGCATTCTCTCTCGAGCGTTGACTGCATACCATTGTTTGCATAACTCTCATCTCTTTGAGTTTTAGTAACTAAATAAACGTTTGTGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841978 lncRNA downstream 2624 27509942 ~ 27510237 (-) True G1609131
TU1841974 lncRNA downstream 6769 27505692 ~ 27506092 (-) True G1609127
TU1841959 lncRNA downstream 21178 27491470 ~ 27491683 (-) True G1609112
TU1841955 lncRNA downstream 29993 27482600 ~ 27482868 (-) True G1609108
TU1841954 lncRNA downstream 33797 27478656 ~ 27479064 (-) True G1609107
TU1841985 lncRNA upstream 1903 27524030 ~ 27524235 (-) True G1609138
TU1841992 lncRNA upstream 88497 27610624 ~ 27705444 (-) True dtnbb
TU1842106 lncRNA upstream 223669 27745796 ~ 27746023 (-) True G1609251
TU1842107 lncRNA upstream 224159 27746286 ~ 27748560 (-) True G1609252
TU1842111 lncRNA upstream 245921 27768048 ~ 27769167 (-) True G1609256
trnaa-agc-7 mRNA downstream 638 27512151 ~ 27512223 (-) True trnaa-agc-7
XM_021573806.2 mRNA downstream 64597 27440900 ~ 27448264 (-) True LOC110497600
XM_036954565.1 mRNA downstream 72786 27425763 ~ 27440075 (-) False LOC110497599
XM_036954566.1 mRNA downstream 72786 27425763 ~ 27440075 (-) False LOC110497599
XM_036954569.1 mRNA downstream 72786 27425763 ~ 27440075 (-) True LOC110497599
XM_021573812.2 mRNA upstream 2518 27524645 ~ 27540638 (-) False LOC110497602
XM_021573810.2 mRNA upstream 2518 27524645 ~ 27541304 (-) True LOC110497602
XM_036954572.1 mRNA upstream 19721 27541848 ~ 27609802 (-) False LOC110497603
XM_036954571.1 mRNA upstream 19721 27541848 ~ 27609849 (-) False LOC110497603
XM_036954573.1 mRNA upstream 19721 27541848 ~ 27609849 (-) False LOC110497603
TU1841803 other downstream 305507 27206230 ~ 27207354 (-) True G1608992
TU1841799 other downstream 311126 27195748 ~ 27201735 (-) True G1608988
TU1841644 other downstream 571481 26937870 ~ 26941380 (-) True G1608844
TU1841604 other downstream 600424 26911397 ~ 26912437 (-) True shprh
TU1841342 other downstream 901878 26584938 ~ 26610983 (-) True G1608576
TU1842195 other upstream 356334 27878461 ~ 27878816 (-) True nkx2.9
TU1842362 other upstream 714469 28236596 ~ 28269145 (-) True plekhh1
TU1842983 other upstream 1120161 28642288 ~ 28650064 (-) True crip1
TU1843094 other upstream 1202128 28724255 ~ 28731546 (-) True mideasb
TU1843130 other upstream 1267294 28789421 ~ 28790413 (-) True G1610194

Expression Profile