RNA id: TU1843241


Basic Information

Item Value
RNA id TU1843241
length 1720
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110497635
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 29008815 ~ 29090489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAACATGGTGCTGTTCCAGGATAGTAGGGTGTCTACCATCTTTATAGGGAAGAATGTGGTGGCTATAGCCACAAAAGCCTGTACGTTCCTGGAGTATAAGAGGCAGGTAAAGGAGTTCCCTCCACAGGACCCTAGCATGGCAGGTATAGCCCTGGAGCTGCATCAAGGGAACTCTGTGGGTCATAGCCACGGGCACAACCAGACCCTGCCCAATGCCACCACTAGCCTCTCTGACGAACCATCACCTACCGAGGTCATAGACACATGACCCTCGCCCATGGATAGTTAGATCTTTTTCACACTATAATGTCGACCGGATCCATGTTGTGACGGCTCTGATATTTACCTTTTACATTGTGCTTACCAGCACGGGTTCAGCAACTACCATCGCAGTACAGCTTGGCTTAgcttggctcagtagtgtgaaaagggtggTAAGTGTCTGACCCTGAGCTCAGCTAGACTGGACTAGACTTCTCAGAGCTCAGCTAGACTGGACTAGACTTCTCAGAGCTCAGCTAGACTGGACTAGACTTCTCAGAGCTCAGTATGACCTCAACCAAGACTGTTCCGGTCCTATGGAGTGGCAGAAAGAAACGACACGTTTCACTGAGACCACTCCAGCTCAGGAAAACGGCCCAGCGCCTTGCCAGCCAGCCTCCCAGATGAACTGATGAGATCATTCTGATGAAGACTGATGTGTTTTTCTATTCTATGATGTGTGTTTCTATACTTCTCTATGGTGGAGtaacagacagacggacacataGAGTTGACCTCAGAGACAAAAACCCAACCCAGCTCAGCAGATATGAGCTCATAGTCTACCTGTTAACcatacctgggttcaaatactatttgaaaccaTGTCAACTACTTTATCTggacttgattgagcttgcctgacaCAATGGAACAAATGGAATAGTAGCAAGAGTGAAAACCACACCCGCCTGGCCCTCCAGGCAGACTAGAGCAAAAACCTAAAAGTGTATTTTTAAATTCAAGTAGTATTTGAAACCAGGTCTGCTGTAAACGCTGTCTTTTTGGACTCTTTTGAGTTTTTGTATTTCCAAGGCAATGTTTTTACGTGATGGTGTACCGCTGTAATTCTCGTTGTCATTTTAaagatatctatctatatatatatatatatatatatatatagccactGTCATTGAAGTGGCATTCATTTGAGGATTCCTGTCCTCTGCGAGGGAATTGCAGAGCAAGAATGGATTGAGGGGATACAAAGAGGCAGAGGGAAGGTATGTGGGGTTGGAGgaggaagcaagagagagatggagggaaggtgaGAGTGGGAGGAAAATGGTTGGGGAGatgggcactgtgtgtgtgtgggaggatggaaaggggtggagagatggaggtgtAAGCCTCTCAGAAGGGGATGTCCCTGGTACTGTCTGGATTTTGAAGTATGAGACCAGACCATATGCACAGTGTCAATATTAGGACAGCCTTAGAGTCACAAGACGTTAGTGTCAGACGCCAGGGCCTGTATGTGTCAAGCGTCTCAgaggaggagtgCTGATCCTCGTTCAGAACTCCGACTCTGAGAtactttgtgaatatgggccctgacTATATTAACTCCTTGTGACTCTGAGGCTGTAATAACAGGTGATTTACAGACCTGTCTGCTTCACTGAGCTCAGCAATATCTGTCAATGGAAGAATAAAGAAGGTTCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1843166 lncRNA downstream 163316 28845162 ~ 28845511 (-) True G1610229
TU1843164 lncRNA downstream 165750 28842848 ~ 28843077 (-) True G1610227
TU1843162 lncRNA downstream 167552 28841039 ~ 28841275 (-) True G1610225
TU1843148 lncRNA downstream 192227 28816378 ~ 28816600 (-) True G1610211
TU1843133 lncRNA downstream 209005 28799381 ~ 28799822 (-) True G1610197
TU1843242 lncRNA upstream 3413 29014012 ~ 29090388 (-) True LOC110497635
TU1843274 lncRNA upstream 41154 29051753 ~ 29066351 (-) True G1610333
TU1843309 lncRNA upstream 98447 29109046 ~ 29109460 (-) True G1610367
TU1843347 lncRNA upstream 134709 29145308 ~ 29145546 (-) True G1610405
TU1843348 lncRNA upstream 135367 29145966 ~ 29146207 (-) True G1610406
XM_021573872.2 mRNA downstream 51097 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 54928 28935079 ~ 28953899 (-) False LOC110497632
XM_036954608.1 mRNA downstream 242624 28757259 ~ 28766203 (-) True tmem62
XM_036954599.1 mRNA downstream 273337 28704168 ~ 28735490 (-) False mideasb
XM_021575335.2 mRNA downstream 277199 28704168 ~ 28731628 (-) False mideasb
XR_002469847.2 mRNA upstream 198225 29208824 ~ 29212107 (-) True LOC110498568
XM_021574959.2 mRNA upstream 706463 29717062 ~ 29729253 (-) True LOC110498326
XM_036954637.1 mRNA upstream 1936854 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954638.1 mRNA upstream 1936854 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954639.1 mRNA upstream 1958276 30968875 ~ 30988951 (-) False si:dkey-288a3.2
TU1843130 other downstream 218414 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 277281 28724255 ~ 28731546 (-) True mideasb
TU1842983 other downstream 358763 28642288 ~ 28650064 (-) True crip1
TU1842362 other downstream 739682 28236596 ~ 28269145 (-) True plekhh1
TU1842195 other downstream 1130011 27878461 ~ 27878816 (-) True nkx2.9
TU1844398 other upstream 875746 29886345 ~ 29886690 (-) True G1611350
TU1844446 other upstream 936801 29947400 ~ 29955786 (-) False G1611392
TU1844494 other upstream 1024319 30034918 ~ 30035682 (-) True G1611431
TU1846340 other upstream 2452522 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 2709323 31719922 ~ 31807247 (-) True G1613722

Expression Profile