RNA id: XM_021574959.2


Basic Information

Item Value
RNA id XM_021574959.2
length 3632
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110498326
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 29717062 ~ 29729253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcaccaatGCACATACTGGCTGGCATACACACATGACCATGTACATATGCACGTGGAtgtgcacacgcatgcacacacagcgGGCACTCTGTCCGAGAGCAGCAGATTACAGTTGTGTGAGGAGTGAGTGACTACTTGCAGTTTACAGTCTAGCTGAGCTCATTTCAGTCGATGTTTATTTGCCTACTACAATGCTGTAATGCCTTTTGTAAGGAGAGggcatattatatattttttataatacGTATTTGGATTGAGCCCATCAGTCGTCGGTTTGTTGTTTGACTTTTCTCAGGCATCCTGCTGCACCCTGACCTTTTTAAAGGGTCAATCTGGAATTGGGATACATCCTGCTGGAACACGGACATCCTGGATGAGtagtgagcAGTGATGAGTGACAGGGAGGCAGTCCAGGCCCATGTCCTTCTGTCATCACAGGGCCACCAGACAGCCCTCCACCGAGCAGCCATGGTGGGGAACAGTGATATCATAGACGGACTCATCAAGGGAGGCTGCGCTCTAGACCTGCAGGACAAGGACGGCAACACGGCGCTCCATGAGGTCTCATGGCATGGCTTCTGTCAGTCAGTCAAACTGTTGGTCAAGGCTGGAGCTGACGTTCACGCCAGGAACAAGGCAGGAAACACAGCTCTCCACCTGGCCTGTCAGAATGCCAATGCTCAGAGCGCCCACGTGCTGCTGCTGGGAGGCTCCAGACCAGACATCAAGAACAATGTGGGGGACACCTGTTTGCATGTGGCAGCACGCTACAATCACCTGGCCATGATCAAGATTCTGGTGGGCGCCTTATGCTCTGTTACGGAGAAAAACCAGCTAGGGGACACTGCTCTCCATGTGGCGGCTGCCCTAAACCACAAGAAAACTGTTCAGCTCCTCCTGGAGGCAGGGACTGACGGCAACGCACGAAACAACGCAGGGAAGACTGCCCTGGACAAGGCCAGAGACTACAACCACAAAGACGTGTCTCTCCTGCTGGCCAGAGCTCCTCAGGTTCACTGTTTCACTAGAGAAAGGATGGTGAGGAAGAAAAGGGACCGGCTGAAGGCAGAACGCAGAACCCAGTCTGTCACTAGAGAAGAAATTCTGCCCAACAAGGACAGTGGGTACATGGCTGAGGCGTCTCACGGTAGTGAGCGTAGGGCCAGCAGAGCAGGGCTGcctcaccatcatcaccaccgcCTTCACTACAGTAAAACATCAGTCACCCCAACCAGCCCTTACCACAGAAGGAGAAGACATAAGCTTTTCAAAGAACAGGCCTTGGCAGAGGATACTCCGAGAAGAAGAATGAATGGCCATCCCGAACTCCACAGGAAGAGCAGACTGTGTACACATGATGAAGCCCCTCCGCCTCACAACGGCAAAACCTATCAGCTATACACCCTGTACCGCGACAAGGACGGCAATGTCAAACAGGCCCCAGCCAATGGCTGCCACTGTAAGCCCCTGATCAAGAGGCTAGAGGGAGAGCTGAACGCCACTAAAGAGGAGATGAGGACACAGATGCTGACGGTTCAGGAGCAAGTCTATTCTAGGCTTGGGAGGATGGACCGCAAGAGCATACACCAGGCCTGTCTGCTACCAGTCAATTCAAATCAACTTTGTTGTACACATGGCTTTTTCTGTCTCATACAGAAAGACAAACTGCAAATACAGCCTGTAAACCTCCACTCGAATTTGTGTGGACATTTGTGTGGAAATGACATGAATGACATACAGATGATAGCTGCTGTTCGGCGTTGTGTTGATCAGATCAAAGTGCTGGACATGTTGACCCAGGAGAGGGTGGCAGCAGAGAGGATGGAGTGTCTCTACAGGTTGGACCAGACAGCTGCccagggcagagaggaggcacagaggagacagCAGGCAGCAGCAACCCAGGAGTTGAAGAGGTGGTGCATGACTCAGATCCAGGATATGGACCTCCACCTCCCAGCCCACCCCCAGTACTACAAGCTGCTCCCCTCTCCGTCTGTGGAGCAGTCTGTGGGGGACGATGGAGACTCAGAGTGCCTCCCCCTGCTCTCTGTCTTCTCTGGGGACAGCAACAGCTCTCTGGCTAACTACGTCAACCTGCTGTCATGCCCTTCACCCTCGCCTTCAATCACCCACAATGCGCCACACAGTCCGGCAATGGAGCAGGGCCAGGGTCAGGGGTCGGGCAGGAAGTACTTTGAGCTGAAGCTGGACAGATCACCAGATGACGACCAGAACACTACTCTTCTCCCTCTGCTAGCTCAACGCCATCACCCAGGAATCCTCCTGAGCTCTACCGCCACCCGGTGTCAGCATCCAGAACTGCTCGACAATCACATTCCGGGGCTGATCTGGGATGGCTGCTCCAGCAGTGTCAGCAGCAGCCAGTCTCCCACCAGCAACTGGAAGCAGGGCCGGGGCCAGGACAGCCATGGCTGGCACCACAAGAAGCACCTCCGTGACCGGATCAGGACGCGCGGCCTGATGAGACCACCCAGTGTCGGGACCAGGACCCTAGAGTTCTTCATGGACAGACCCCCTGAGCCCACATTCAGTCAGGAGAGAAACAACCTACACGCCATGGAGGTGACCCAGAGGTTCTTTGAGACAGTGTCCACTCAGCTGGAGTGCTGGTATGAGAGGAAGATCCAGGATGCCAAGCGGCAGGCAGAGCTCAGGGCACAGCAGGACAGGGCCGAACTCCTGCAGCGAATTAGAAGCCTGGAGGAGGAGCTTGAACAGCTCAGGATGACCAATGGGAGCACAGACAGTTGATGCCAACCGGGCTGACATCATGAGTTTGAGCAGAGGAAGAGATGAAGCGAGAGGGTTTACTttgcccaaaatctgtccacgaaaATAAGACCGCAAAGTGAGGAATTTTTTATGGAGGACAATGAGTCGAATTTGGATAAGAAAAACTTGAATTGCTTACTTGATCAAATAAAAGTTTCAAAATGGTTAGGTTGTTATGAATGCATTGATATAAGTGAACGCATGTGGCATTTCGGAAACctaatttttttttaacttaatcTGAGTTGTGCCTTTTGTTCACAcgtgtatctgccctctcattggctagaatagTCCCACCTGATCTCGACTCCTTTGGCCTGCCTTCCATCAAAGACAATACAGtgcttccatctttgaggacactCATTTCCAATGTTAGTGGTCACtcgactatcttgtcaatataatagttTATAATATTATagttataatattatatagtTATAATAGTCTTTGGttttacccttaccttaacctaattgtaacccatttgaaaatgaaatatcacatctGCTACGTCCCCTTTGTTTTTCCCATTTAttgcttatacagtgccttgcaaaagtattcaacccccttggcgtttttttcAATTTTATTCCATTACAACCtgcaatttaaattgatttttatttggttttcatgtaatggacatacacaaaatagtccaaattggtgaaatgaaatgaaaaaagatTAAAACTCAGAAAAGTGGTGAGCGCatttgtattcaccccctttgctatgaagcccctaaataagatctggtgcaaccaattaccttcagaagtcacttaattagttagattgcacacaggtggacaatatttaa

Function

GO: NA

KEGG:

id description
K06867 K06867; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1844259 lncRNA downstream 13893 29702956 ~ 29703169 (-) True G1611237
TU1844236 lncRNA downstream 25350 29676826 ~ 29691712 (-) True G1611215
TU1844230 lncRNA downstream 53546 29663285 ~ 29663516 (-) True G1611209
TU1844197 lncRNA downstream 103639 29609153 ~ 29613423 (-) True G1611176
TU1844195 lncRNA downstream 112093 29603769 ~ 29604969 (-) True G1611175
TU1844391 lncRNA upstream 145493 29874746 ~ 29874978 (-) True G1611343
TU1844393 lncRNA upstream 146154 29875407 ~ 29875680 (-) True G1611345
TU1844386 lncRNA upstream 151246 29880499 ~ 29881027 (-) True G1611338
TU1844385 lncRNA upstream 151962 29881215 ~ 29881587 (-) True G1611337
TU1844400 lncRNA upstream 160781 29890034 ~ 29890304 (-) True G1611352
XR_002469847.2 mRNA downstream 504955 29208824 ~ 29212107 (-) True LOC110498568
XM_036954609.1 mRNA downstream 626573 29008815 ~ 29090489 (-) False LOC110497635
XM_021573872.2 mRNA downstream 759332 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 763163 28935079 ~ 28953899 (-) False LOC110497632
XM_036954608.1 mRNA downstream 950859 28757259 ~ 28766203 (-) True tmem62
XM_036954637.1 mRNA upstream 1218200 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954638.1 mRNA upstream 1218200 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954639.1 mRNA upstream 1239622 30968875 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954642.1 mRNA upstream 1838100 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 1838100 31567353 ~ 31629055 (-) False bcl11ba
TU1843130 other downstream 926649 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 985516 28724255 ~ 28731546 (-) True mideasb
TU1842983 other downstream 1066998 28642288 ~ 28650064 (-) True crip1
TU1842362 other downstream 1447917 28236596 ~ 28269145 (-) True plekhh1
TU1842195 other downstream 1838246 27878461 ~ 27878816 (-) True nkx2.9
TU1844398 other upstream 157092 29886345 ~ 29886690 (-) True G1611350
TU1844446 other upstream 218147 29947400 ~ 29955786 (-) False G1611392
TU1844494 other upstream 305665 30034918 ~ 30035682 (-) True G1611431
TU1846340 other upstream 1733868 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 1990669 31719922 ~ 31807247 (-) True G1613722

Expression Profile