RNA id: XM_036954637.1


Basic Information

Item Value
RNA id XM_036954637.1
length 2278
RNA type mRNA
GC content 0.46
exon number 10
gene id si:dkey-288a3.2
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30911393 ~ 30988951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGACGTTGATGCAGGTGCTCATGctgaggaggagatgaaggaggaTAAAGGagaagagcagcagcagcagcacatcTACATTCAAAAGTATAAACATTTGATAGGTTTAGCAAAGTTAGTAGAGATTGCAGGCAGTGAGAATATCAAAATGAGAAGTCGATCATTCTAAatttgtatgatatatattatatattgtgtAGTTATCAATTATATTGTAACCTATTTTATACAAGTTTAACTGAATTATTATTGTACTTGTTGCTGGCCATTTGATAGTTTTAGAAAATATTGGGTTTCACTTGCATCACATGGCATGGCTCATGAATAAGATATGGGCACATGAGTAGCCCTATCTTGTTTCTAGCCTGAGCATCTCCCTGGAAGTGTTGCACTGGAAACCTAAACTTTGGGAGAGTTTGAATCCTGTTGCCACTAGACGAGGAGTTTATTCAATGCCATCGCTTTTATAACAAAACGTGTAGTTTGATGACCTGTGAGCTACGACTGTATAAAACAAGAATGGCCCTTGAGATGTCCAACGATAAACGGATAAAACTCGGAGCGCTCTGGTGACTCGAATCCAATTGCGCCCCTATCCAAAAAATATCCTCCCCAACTGGGAGATTCATACTGGACGTTTGGAAGCGGAACGAACGATGACTAGACGCAGTGACAGCGATAATGACGGAGAGACTTCATCCCCGTCTCCGTCCTGGCGCCCAAAGAAATGTAAAGGTGAAAAGCATGTGTCTTTCCCTCCGGATGAGGAGATAGTGTCAGGCTTCGCTGAGCGCAAGGACACGATCAATGTTGACAGCCTCACCTTGGCAGAGGTAATTGAGGCCTACAAGAGGAGCTGCGACAGGCACCAGGTGGAACCTAAACCCAAGATTCTGGAACAACTTGAGcAGGTTACCAGTTTAAATGGCAGGGCCCCATGTCTGGATTTGAAAGGTGAGCGATTAGACCACCTTTCCTGCGAGGCTCTGGAAGTCATACTGAAATCACTGAGCTTTGATTTCATCAATCTGCAAGCGGCAGAGCTGGAGGAAAATgGAGCATCATCCTTGCTGGATATGATTTTGTATTATGAATCTACCCCCCATCTTGACATCTCTGACAACACCGGCATGGGGATATCTGGTTGGAAGGCCCTCTCTCATTTGATAAAgcagagtgtgtgtctgttGAGGCTGGATGTGTGTAACGTGGCCCTGCTACAGTATCCAGCCCAGGTCCTGTCAAGAGCCCTCCTAAGCAGCAGACTCACCGTGCTGCACCTCCAAAGCACCTGCCTCAGTGGCAGACCCCTCTTCACGCTTGTGGCTGCTCTGAAGAGCAACAGAGCGCTCCGGGAGCTGTACCTGTCCAACAATAATCTGAACAGCGAACAGGACTCTATGCAGTTAGGAGACCTGCTCAGATACAACAGCTCAATCACTACTCTGGACCTCAGCAACAACACCATAGCAAACTCAGGACTGGAGGAGATCTGTGAAGGTCTGAGAGTTCAGACAGATGGACTGAAGATTCTGATTCTATGGAACAACCAGATCACTAACAATGGACTGGTCCATCTAGCCAAAGTTCTGCCTGTCCTAAAGACTCTGGAGACATTGAACCTGGGGGAGAATAACCTGCAGAACAGAGGTATCCACACACTGAGGGAATCTCTGATGATGAACCACTCACTTTTGCAGCTaggcctggaacacacacacttcacttgTGAAGgtgctgtAGCTTTGGCTGAGTTCCTAGCTGAGAGCCGTCAGATCCAGCGCCTGGACGTGCGTGAGAACGAAGTCAGGGCTGGAGGTCTCATGGCCCTCTCTCTGGCCTTACGAATCAACCACAGCCTCACCTCACTAGACCTGGACCACACACCCAAACAGGAACAGGTACATCAGTCTCAAGCAGAGCTGAGGAGAACAATGCTGCCACAACTTAAATATGAGTACTTTAATCCACAGTCGTTAGTTGGTCATGTTAAAGTTCACAATTGGAAGTCAGATAAAGACAACTAAAAAGTAATCCATGGTGGTATGTCAGTGTTGCCTttttctcctctgtgtgtgtctgtgaaggcCTGAGGAGAACTATTCTGCCACTACCTTAATACAGGCCCCTGCTGGATTCACAAAATAATTACCCACACTTGCCATCTGTTTGTCATGATTTTATCTCAGCTAACTTATTTGCATATTAAAGCATTAATTAAAATCTCCAAGGAACGGAATTCTTACTTTAAAATTAACTCCAATGGCTTCGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1845771 lncRNA downstream 38675 30908427 ~ 30908778 (-) True G1612665
TU1845736 lncRNA downstream 55361 30845264 ~ 30892092 (-) True G1612631
TU1845460 lncRNA downstream 190028 30757063 ~ 30757425 (-) True G1612367
TU1845442 lncRNA downstream 201048 30746204 ~ 30746405 (-) True G1612349
TU1845429 lncRNA downstream 207786 30739412 ~ 30739667 (-) True G1612336
TU1845912 lncRNA upstream 121362 31110313 ~ 31110609 (-) True G1612802
TU1845923 lncRNA upstream 132677 31121628 ~ 31121837 (-) True G1612813
TU1845935 lncRNA upstream 143663 31132614 ~ 31132954 (-) True G1612825
TU1845943 lncRNA upstream 147923 31136874 ~ 31137119 (-) True G1612833
TU1845951 lncRNA upstream 153888 31142839 ~ 31143121 (-) True G1612841
XM_021574959.2 mRNA downstream 1218200 29717062 ~ 29729253 (-) True LOC110498326
XR_002469847.2 mRNA downstream 1735346 29208824 ~ 29212107 (-) True LOC110498568
XM_036954609.1 mRNA downstream 1856964 29008815 ~ 29090489 (-) False LOC110497635
XM_021573872.2 mRNA downstream 1989723 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 1993554 28935079 ~ 28953899 (-) False LOC110497632
XM_036954642.1 mRNA upstream 578402 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 578402 31567353 ~ 31629055 (-) False bcl11ba
XM_036954640.1 mRNA upstream 582526 31571477 ~ 31629054 (-) True bcl11ba
XM_021573910.2 mRNA upstream 664711 31653662 ~ 31716420 (-) False setd3
XM_021573911.2 mRNA upstream 664711 31653662 ~ 31717551 (-) False setd3
TU1844494 other downstream 911771 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 991667 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 1060763 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 2157040 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 2215907 28724255 ~ 28731546 (-) True mideasb
TU1846340 other upstream 474170 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 730971 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 1027249 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 1469579 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 1661975 32650926 ~ 32657769 (-) True G1615357

Expression Profile