RNA id: TU1845773


Basic Information

Item Value
RNA id TU1845773
length 1403
lncRNA type read_through
GC content 0.38
exon number 2
gene id si:dkey-288a3.2
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30911393 ~ 30988951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCTGCCACAACaatacttgaaaataccGAGGGTTTCACtctgtgttgtgttctattggatttgacccaaacctGTAGTTTTTAattcaggccaaaaagtgaaTGTCTTTGCCTtgttgttttgcagtattacttaactGCCTTGTTGCGGTTAAGAATGGATGATTTGGAGGGGATTTTTTTGGaacacaggcttccttcttttcagtaatgtggagtgaatgcaatgttgttgatccctttgtattttcaagtattgtcGTGGCAGCattagggctgtggtggtcatgaagttttgtcagccggtgattgtcatgcaaataactgccggtctcacggtaattgattgttaattaacattaacacatttagcgtctcctggcttccacgcatagcatacaagccactgatgcagacatCTACATTTAAAGAAGTCtgataaatcaatttaatatagcctataccatcacaataaatccattatttattttagacaggtctaaagaaacatgatatgaagaaaatgtagtctatttcagaagaacagaatagcatactctgagttgtccttatgttaggtcctgatctggctatgccaaattgGCTACActaggtcatttagcagacaagatttgctcagaattccgtggcattatttgattgtatgaagaatacaattgatcATAGTtgagaataaaatagaaaggatatttttccaaACAATTTGAGGGAGTGCCTACATGCAGCTATTttgtgttgagtggttaacaaagaaacaggtcctcctatatgcttaatttagttaTTTATGCAACTGTATTCTGAtacaaacattgggctatatgttctgatttttaatacattctacgGCTGCAttatgcgactctaatgatgatttgaaaaaagttgcatgaaaggcatgagctctgctttgtttattgcataggctgcacacacttcatcagtatATCATTTACAATTTGACAAGGACTTGATAATGCCTTAAATTTTCCGGTGGTATCCTCTTTGTGTGGctgtaatgccccctaaaaaaatcTATGCCCTTTGTGGacattgtgcccttgggctgaatataataattataattcccttcttcCGGCTGCATGCTCCGATGcatctctcactcacatggctctctcagttatctcaattcttattagccaatgcccgTCACATGATCGGGtgtttctcacaggctacaagtgaagacaaaCACATCGGGGATGCAACTGCACGTCCTTATTGAATTCCGAGGCACATATTGAAGATGTTGGAAGAACTGTctacatttacttttcgtcagccaacaagaagAGTAGGcttaacgaacagcaaaagcactagcctatgtcaatctgcTATCCCCCATAATACAAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1845771 lncRNA downstream 2615 30908427 ~ 30908778 (-) True G1612665
TU1845736 lncRNA downstream 19301 30845264 ~ 30892092 (-) True G1612631
TU1845460 lncRNA downstream 153968 30757063 ~ 30757425 (-) True G1612367
TU1845442 lncRNA downstream 164988 30746204 ~ 30746405 (-) True G1612349
TU1845429 lncRNA downstream 171726 30739412 ~ 30739667 (-) True G1612336
TU1845912 lncRNA upstream 162519 31110313 ~ 31110609 (-) True G1612802
TU1845923 lncRNA upstream 173834 31121628 ~ 31121837 (-) True G1612813
TU1845935 lncRNA upstream 184820 31132614 ~ 31132954 (-) True G1612825
TU1845943 lncRNA upstream 189080 31136874 ~ 31137119 (-) True G1612833
TU1845951 lncRNA upstream 195045 31142839 ~ 31143121 (-) True G1612841
XM_021574959.2 mRNA downstream 1182140 29717062 ~ 29729253 (-) True LOC110498326
XR_002469847.2 mRNA downstream 1699286 29208824 ~ 29212107 (-) True LOC110498568
XM_036954609.1 mRNA downstream 1820904 29008815 ~ 29090489 (-) False LOC110497635
XM_021573872.2 mRNA downstream 1953663 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 1957494 28935079 ~ 28953899 (-) False LOC110497632
XM_036954639.1 mRNA upstream 21081 30968875 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954642.1 mRNA upstream 619559 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 619559 31567353 ~ 31629055 (-) False bcl11ba
XM_036954640.1 mRNA upstream 623683 31571477 ~ 31629054 (-) True bcl11ba
XM_021573910.2 mRNA upstream 705868 31653662 ~ 31716420 (-) False setd3
TU1844494 other downstream 875711 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 955607 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 1024703 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 2120980 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 2179847 28724255 ~ 28731546 (-) True mideasb
TU1846340 other upstream 515327 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 772128 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 1068406 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 1510736 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 1703132 32650926 ~ 32657769 (-) True G1615357

Expression Profile