RNA id: XM_036954643.1


Basic Information

Item Value
RNA id XM_036954643.1
length 5232
RNA type mRNA
GC content 0.47
exon number 13
gene id setd3
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 31653662 ~ 31717607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACCTATCAACAGCCAATACAAATCAAGAAATATAACTTTGTTGATGTTGGTATAGAACGTTTTCGCTCCAATCACATAGTTAGAAAACGGTGTTCCAGGCATAGCTCGCCCAAATCAACATCATGTTTGGTTTCGCTCGCCTACCGTGTGGAAGAGGATTGTGCACAGTTTGACAGGAGAGGAACTACTGCACTCCATTTACGCTGCACCATGGGAAAGAAGAGTCGAGTGAAGACTCAGAAGTCGGGGACAGGCGCCATGGCTGTGGTCTCCCCCAGAGAGATGATAAACCTCATATCGGAGCTCTTACAGAAATGCAGCAGTGCTGCCCCTTCTCCAGGGAAAGAGTGGGAGGAGTACGTCCAGATACGAGGCTTGGTGGAGAAGATCCGGAAGAAACAGAAAGgTATCTCAGTGATATTCGAGGGCAGCAGAGAGGAGTTCTTCCCGACACTGATGGCGTGGGCTCAGGAGAGTGGAGCGTCCTGCGAGGGTTTTGAGATCGCCAACTTTGCTGGCGAGGGCTTCGGCCTCAGGGCCACCAAGGACATCAAGGCAGAGGAGCTGTTTCTGTGGATCCCCAGGAAGATGCTGATGACTGTGGAATCAGCCAAGAACTCTGTCCTGGgTCCCCTGTACAGCCAGGACCGTATTCTCCAGGCCATGGGTAATGTGACTCTGGCCCTCCACCTGCTGTGTGAGCGGGCTGACCCCTCCTCCCCCTGGCTGCCCTACATCAAGACCCTCCCCGGGGACTACGACACCCCTCTCTACTACGAGGAGGAGGAAGTACGCCACCTGCTGTCCACTCAGGCCATCCAGGACGTCCTCAGCCAGTACAAGAACACCGCTCGGCAGTACGCATACTTCTACAAGGTCATCCAGACTCATCCGACCACCAGTAAACTGCCCTTGAAGGACGCCTTTACGTACGACGACtacagATGGGCGGTTTCCTCGGTGATGACCCGTCAGAACCAGATTCCTACAGAGGACGGTAGCCGCGTCACCCTCGCCCTCATCCCCCTCTGGGACATGTGTAACCATACCAACGGTCTGatcACCACTGGTTACAACCTGGAGGATGACCGGTGTGAGTGTGTGGCTCTGCAGGACTACAAAGAGAACGACCAGATTTACATATTCTATGGGACGCGGTCCAACGCTGAGTTTGTGATCCACAACGGCTTCTTCTTCCAGGAGAACGCCCACGACAGGGTCAAGATCAAACTGGGCGTGTCCAAGAGTGAACGGCTGTACGCCATGAAGGCGGAGGTGCTGGCTCGCGCTGGCATCCCCTCGTCTAGTATCTTTGCCCTGCACTGCAGCGATCCTCCAATCTCTGCCCAGCTGTTGGCCTTCCTCAGAGTCTTCTGTATGACCGAGGAGCTGAAGGACTACCTGGTAGGAGAACATGCCATCAATAAGATCTTCACCCTGGGAAACACCGAGTTCCCTGTGAGCTGGGACAATGAGATCAAACTGTGGACTTTCCTGGAGACCAGGGCTGCCCTGCTGCTCCAGACCTACAAGACCAGCTCCCAGGATGACCAGTGTGCGTTGGAGAAGCCcggcctctctctccactcccgcGTTGCCATCCAGCTGCGCCTGGCTGAGAAGCAGATCCTAGAGAAGGTGGTGGCCAGCGGCAAGGCCAAGCGCCTGCACttccagcagcagcaggaggagggcgCTCCGCTGCCCCGCTATGAGGAGAGCGACATCGCCCTGCTGGAGAATGCCGAAGCCGACGACAAACTGCCAATCATCCTGAGGAAactagaggaggaggacgaggagggagACGATCAGGCAGCGGTGGAGCAGGTGTTGGCTCAGGTACAGCAGCTGGGACACGGGGGCGCAGCCAGGGATCTAGCCCCCCTCATAGTCAACGGGGATGGTGGGAAGGTGGTGGTCAACGGGAATGGTACGGACGCTAGCCCAGTCCTGCAGGTTGGAGACGCTAGCCCGATCTCCTCAGACGCAGGCCGAAGTGTTAGCCAAGCCCAGGACACTAGCCCTGCTCAGGAGGGGGATAATGTGGATGCTAACTCCACCATGCCTGACACTGCTGTCCCTGCAACCACCCAGGAACAGGAAGGCCAAACCAGGAACGGAGACGAGGCTACTGCTTCTCTCTCACTGGGAGTGGACTTGGACCTGAGTGCGGAACGAACTGGAGACGAGCCCAAAGTCAACATTGAATAGATGGAATCATCATCTAGCTAACCGTTATTGCAGAAGAAGAGcagcagtcagccagtcagtcagcccttttctatttctttatttttgtctCTCTAAAGTGACTCAGAAATAAAGGAGctaagaataaaaaataaaaaacagaatttGAATTTTTAAATGGTAGAACTTTTCACTATCTGTCCATTTCGTTGGTTCGTCCCTCCTTCCATGGCTTTGTTATTAGTGCCTTTCTACCTACCAACCGCTCCCGACTGCTTGCACACTGCCAGTCAGTGTCTCCCCCATCGGCCTTCTGTCTGAGCATTAGAAGTTTGTCATTTACATGAAAAACTGGCTTTTTGTTGTTGAGGTTTGAACAGTGCTTTACTGGTTTACATTGACTTTATTCACATACAAGCTGTGAGAGAACGGTAGGGATCAACAATGGCAGGGGACGACCCTGGTTTCAGTTCCACTACTGTAGGTTGaacagaaggaaagaaattagaTTTGAATTGTATTTAATTTAGTCTCGAGCAAGCCAAAATCTCATCCTAACCCTTTACCTCTGTCAGTTTATTACTGTAGTTTATCTTAACGCTGCAATATGTGTTACTTTTTGGgaaacctgaccaaattcacatagcaATGGGATTTTTAGATCTGTCATTTTCATTGATAGTAAGTTTAAGAAGTGTTAGATCAGTTCTATGTACGCTATTTCTATGTTTCCtattcttaagtttagtttttgagTCTTTTACTTTCGCTTTAGTACAAATACAATTTTTGGGGTTATTGAtaagatatttcacagcggtttgtTTTGTTACAAACTGAAATTACTGAATTTTTGAAACCAGGAAATGGCgcagcgatttctgcatattgcaccttttaaTACACACCTAGTATAATTTCACAATCTTTTTCTCTGGCTCTTTGTTCTCTGTTTGAGATCatcacttcccctctctctcttctcgcgcTGCACTTCCTGGTTTTACTCAATAGCTTTTTAAATACAACTGAAGGAAACTGCTGGCACAAAATGTCCTGTGCACTTCTTCTGGGAACAATCagtattttatttctttactcaAGAGTATGAAGTACCATTTGAAATGTAATGGAAAGGATAATATGTGTGTTGATTGAGTGAAATTTGATGGCTAAAATCAGGTGATTTgggtcttctttttttttttcttcatttaaaACTTTATTATGAATGTACCTCAGCTCTTCAAGTTGCAAATTGAATCACCCAAGGATGAGTTTCTGTTGTGATGAAGAATATGACTAACGCTAGTCCATATTATGAGAGCCATAATTCAGAATGGTGACGAAGTCGAACCTTCAGCGAGACACGACAAGACGTGGTTCACACAAAGGACTTCTGCTCATTTCACTTAGATGCTGGTTTTGTAGTTCGACATCCTGAAACGGTGCAAACTATTTTTGTTACTCCTCCCTCCACACCAGAAACGAGACAAACAACCCGTTAATAAAGAGGTCTCTGATCCAATCGCAAATTTTCaacgtatgtttttttttgtctgtatTGACATCTGCTCTATGTTCAGCTTAGTTAGTTTTTTTTGTCTGTATTGACATCTGCTCTATGTTCAGCTtagtttgttttttttgtctgtaTTGACATCTGCTCTATGTTCagcttagttttttttttttgtctgtattGACATCTGCTCTATGTTCAGCTTAGTTAGTTTTTTGTGTTAGCCAATAAATGGCTATCGAAACATGATGTGGAGTTTAGCTCTCTCTCCGTTAGATGCCTAAGCTCTTAAATAACCCCGTAACTCCAGTACAGTAGCTGTTATTGTCATTTCATCTGTTAGCAGACAGCGGTTCATGTCGGCACAGGGAGCTAATTCATTGGCGGCTGCATACTCGTCTCTCCCGCgcgacggacggacggacggacggacggacggacggatttGAGCGGCCATTTTTAATAGGCCATGCACAAGCAGTTTATTTTCGCCTTTCTCCAAAGTGTTAGCTCGCGCTACTTAATTCTAATTTGTCTATCTGTTCATGCTGTTACCAACTGCAAAACGAGAGTTGCTCCGAAGTCTATTCTGCTGTATAACGCAACTATAAAAGGGGCTCGTTTTCTACCTTTGTTGAAGTATCACCTTGTTTCCTGCTGCATACTGTGCTTTGTCGCACTCCGACCTCTCATCATGGACGGGTTTGTTCCTGTATTTTGATTGACTCCCACTGGACTACTACCACTACTTGCCATTTTGTACGATTCTCTACCAGTCTTTACCTGCTGCTTCTCTAAAGATTGTTTCCAGTTAGTGTAGTGTACAGTTACTGAGAATTCTTCCTACTGATTTAACCAATCACACTCTCCAAGCAATTCTCAGCACCCTGTTCTATCTAGCCACAAAGTCCTCACCAGCTCGCCTCTtcgcctggtcccaggtctgtttgtgctcttgcccaaccccattgctgtcattgtcaagccaatgagtgacaaggagttggcatgatggcacaaacagatgAGCACTCGGGCTACCTTTACAAGCCTGGTCCAAGATCTGTACTCTGTGCTTTAGCTAACTCCTCTGACAGTGATAGTTGGTGGTAACGTTTAGACTTTTGCAGGGTTCTCGTGACCATATGATGATTATTGTAAGTACAGTGTAACTGTTGAAATGATTCATTGTTACTGTACATGACAGCAACTCTAGTCTCGGGGAACCAAGGCTTCTCACATTCTGGCAACAAGACCAGGTTTGAAAGGATGTCCCTACGAGACTaccctaacctttaccttaaACGCAGTGTAAGTACAGTGACAAGTTGGCACAATACTTCTTACACTGTACAacatacagatctaggatcagtccaGCTCACCACATTGCAGTAGTTTGAGGTTGGTCCCGTGTGATGGTGACAGAAGGTTGCGATGGACAACACAGAATAGTCATGAAACTGTCCACATGGAAGCGCCACAGATTAAAGTGACTCTAATTTCTCACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1846856 lncRNA downstream 883 31652039 ~ 31652779 (-) True G1613689
TU1846853 lncRNA downstream 7789 31645641 ~ 31645873 (-) True G1613686
TU1846845 lncRNA downstream 15095 31638360 ~ 31638567 (-) True G1613680
TU1846782 lncRNA downstream 116178 31537253 ~ 31537484 (-) True G1613623
TU1846765 lncRNA downstream 144258 31509192 ~ 31509404 (-) True G1613606
TU1846874 lncRNA upstream 5433 31723040 ~ 31724710 (-) True G1613704
TU1846890 lncRNA upstream 13220 31730827 ~ 31780475 (-) False ccdc85ca
TU1846893 lncRNA upstream 13220 31730827 ~ 31737698 (-) True ccdc85ca
TU1846955 lncRNA upstream 113894 31831501 ~ 31832436 (-) True G1613770
TU1846983 lncRNA upstream 144327 31861934 ~ 31863457 (-) True G1613798
XM_036954641.1 mRNA downstream 24607 31567353 ~ 31629055 (-) False bcl11ba
XM_036954640.1 mRNA downstream 24608 31571477 ~ 31629054 (-) True bcl11ba
XM_036954642.1 mRNA downstream 24610 31567353 ~ 31629052 (-) False bcl11ba
XM_036954637.1 mRNA downstream 664711 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954644.1 mRNA upstream 15405 31733012 ~ 31790806 (-) False ccdc85ca
XM_036954646.1 mRNA upstream 15405 31733012 ~ 31790808 (-) False ccdc85ca
XM_021573917.2 mRNA upstream 96859 31814466 ~ 31819417 (-) False haus2
XM_021573918.2 mRNA upstream 96859 31814466 ~ 31819888 (-) False haus2
XM_036954647.1 mRNA upstream 96880 31814487 ~ 31822631 (-) True haus2
TU1846340 other downstream 189766 31463121 ~ 31463896 (-) True G1613218
TU1844494 other downstream 1617980 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 1697876 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 1766972 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 2863249 28789421 ~ 28790413 (-) True G1610194
TU1846906 other upstream 2315 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 298593 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 740923 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 933319 32650926 ~ 32657769 (-) True G1615357
TU1848792 other upstream 1054310 32771917 ~ 32775704 (-) True LOC110497688

Expression Profile