RNA id: TU1846893


Basic Information

Item Value
RNA id TU1846893
length 5126
lncRNA type sense_over
GC content 0.44
exon number 4
gene id ccdc85ca
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 31730827 ~ 31790808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGATGAGAGTTGTAATGAGCTGATTAAACCAGGGATTTGCCCTCCTTTAGGGGTCTGGGTCGGTGAACTATagtaccccagagagagagaagggaggtgggGGGATTAATTTGGATTGCTCACATCTCTGAAAATAAAGTACATGTGTGTGACCACTCTgaccatctctcccttcctctctccagggCTCCGGTAGGACCCCTAGTGGTGAGCCATCCCCCCCAGCAGACTACCTCCCTGTGGGCCAGAAGACCGAGGCTGTGGTCCATGCCATGAAGGTGCTCGAGGTCCATGAGAATCTAGAGAAGAAAATCCCTGAAGACTATGACAAGGACCTCAGTGAGAAGGAGAAGGCCATCGTCAGGGAGATGTGTAACGTGGTGTGGCGTAAACTGGGTGACGCTGCGGGCTCCAAGCCGTCAATCCGCCAGCATCTCTCTGGGAACCAGTTCAAAGGGCCTTTGTAGTCCCTAGGACGACATTAACCAGCACTCAAACGAGACAAACGGAcagacaaataaataaacaacaacaacaatggatCCTCAGCACTGACTGGACAAAGGGACACATCTCAATTGaccctctcctactctctcagcACTGTGACCGTGGCTAGATGATCCAGAcaaaccctaacctaaacccagCCCACTGCCTCTGCATCTGTGATATCCATCTTTGGCCTCCCTTAACCTCATGCCCTGGTGGATATTGGAATGGTGACCTGACCTGGGTAGTGGCTACAGGCAATTTCAGATTAGGGCAAAACAGACTGTGGCGACGAATGGTTCGAAACAGCAGGTGGCCGTCCTATCGCCTCCACAGCACAACAGAGCATCTGCCTTCATTTTCTGTTCAATGCCTGACTATTCTACATTTTGAATCGCCACCGTCACTTGACAGTTATGGTGTGTTTttgaagaagaggaagatgaagGGAGGATAGAGGTACGAGGCATGCATTACCAACTAAACTCTCCCTTACAACCTCACAACCAGTCACGACAGTACTGAGCTACTATACCTGTGACCTgttctacagtactacacctgacAGTCCCAACCAGTCACGACAGTACTGAGCTACTATACCTGTGACCTgttctacagtactacacctgacAGTCCCAACCAGTCACGACAGTACTGAGCTAGAGTACTACACCATCTCCACCCAACGTCTCTTTTTGTGTTTGTGTAAATGTTCACCTACCAAGTGTTCAGGACTGACAACCACTCTAGGACGGACTATTCTACTGGAGGCCCTGTTCTGTTCTTGACTTTGCTTCCATGACTTCTCCACAGGCCACTGACTGACAACTGACTGACAACCTACTTTAAATATGAGGAAAAATCCTGGAAATGTTCTGATGTAATTTCCTTCGGTGTATAGTCACAAGCCATAGGTTTGCATGACTTGAAACCTAGCTGCTGCAGCCTACTGTTTAATAGTGTCGTCCCCTTTTGCCTGAGCAGGAAGTATGTGTTCAAGTGTAGACAGAATTGATTTCAAAGTGTTCAACTCAATTCTAGCACCAACTCAGTTATGTGTAACAAAACATAgccctgtttaaaaaaaaagttataattTAAGACCGTGTTTGTTTGcgcctcaaatggcaccctattccctctaccAACACCATATAGGCAtgagggtgccatttcggatgcaCACGTTGTAACTAAGTACAGAAAGTGGAACACTGAGTTCAGTTTCATACCCTGTGTTTCGAAAGTTTCCTCCCAGGCAGAAAGCTTATAGCCTGGGTAGGGTCTGTTTATGCTCTCCTGCCAACTCCTAGAATTGTCAAGCCAAAATGTGTATATTTTAGTCatgtagcagacactcttatccagagcaacttacaggagtgAGTTCATACATTTTCTCATAAgagtcccccgtgggaatcaaactaACAACCCTGTtcttgcaagcaccatgctctaccagttGAGCCATACAGGACTTGACAATGTCTGCAATGGAGTTGGCAATAGGACAAACAGTTCTCGGACCAGGCTTGAAAGCTTAGCCTGTCAGACTATTAACTGAAACCTTAAGTCGAGGGAGAGGTTTTGGTTCATGCATAATATAAGGTGGCTTCTGATGATTGATCATGGATTAGAACGTCAGGATCTTGCTAGATGGAAGTGGACTTTGAATTCAAAATCTGAATTTCTAATGTATGACAATCCTTGAAACGGTTTTGAAAACAGCTGTTATTTTGACCCGTCCTAACTTTTCCTCAATGAGCTCTTATAGGGACCATACCTTATGAAGTCTCATTGGAGACTATGTACACTACATGAGGTCTCTTAGCTTGGTCCGATGTATACTTTATAAGGTGTCTTAGCTGGCTCCTGTACATTATGATGTGTTAGGCCCGATGTGTGCACAATGAAGTCTCCTAGAGTCCCTATGTCTGCTCTATAAAGTCTCATAGCTGTCATCTCTATAGTAGGACTTCAGTGTACAATCCACTGACACGCGCCAATTATGTTGacatcgattaaggcagccccccgcaccgcTCTTGGGTTGGGTTAAACGCGGAAgccacatttcagttgaatgcattcagttgtacaactgacaaggtatcccctttccctttctccctcccctttccctttctccctcccctttccctttctccctcccctttcccccaCTGCGTAGCTAAATGAAGCTTCATAGCTGTGTTCTATACTCTGTGGTACCTCCTAGCTGATTGCTGTGTATTTGAGTCTTCTCAGTATTGTATGGTGAGGGCTAATAGATAAGCTACATAACATTGCCATGAGACTGACATAACAGATGACATAACGGATGTCATTAAGAGTTATAGCAACATAACAGACGGATGTCATTAGGAGTaataacatacactacatgagcaaaagtatgtggacacctgctcgtcgaacatctcattccacaaTCATGgtctttaatatggagttggtctcccctttgcttctataacagcctcccctcttctgggaaggctttccactagatattggaacattgctgtggggacttgcttccattcagccacaagagcactagtgaggttgggcactgatgttgggcgattgggcctggctcgtagtcggcgttccaattcatcccaaagatgttcgatggggttgatggCAGGGCTCTGTGctgaccagtcaagttcttccacaccatttctgtatggaattTGCTTTTGCATGGGGGCAATGTCATTGCTGTAACAGGAAAgcgccttccccaaactgttgccacaaagttgcaaGCACAGAatcagattcgtctgtcggactgccatatggtgaagtgtgattcatcactccagagaacgcgcttccactactccagagtccaatggcggcgagctttaaaccactccagctgatgcttggcattgcacatgctgatcttaggcttgtgtgcggctgcttggccatggaaacctatttcatgaagctcccgacgagttcttgtgctgaagttgcttccagagggagtttggagtgttgcaaccgaggacagacaattgttttgcgctacgcgcttcagcactcagcggtcccgttctgtgagcgtgtgtggcctaccacttcgcggctgagccgttgttgctcctagacatttgcaagtcactgagctcttcagtaaggccattcgacTGCTAATATTTGTCTGTGGAGATTACATGGCTTTGTGCGCAgttgtatacacctgtcatcaactggtgtgtggctgaaatagacgaatccactaatttgaagggatgtccacatactcttgtatatatagtgtatgactGTGTATATGATATCTTACCTATAGGGGTTCAGGAGTTGTATGTAAAACGAATGAAGTCTGATAGCTGAGCTGAGTTGTATGCATATGTAAGGCCAGTGAATAATGTATATGAGTACTCATAAGAGTCTTATATACTGTATGAGTTCTCTTGGCTAGTCTGTGGTCTGAATAGGCAGTTATGAACTGTTAAAAGACACTTGCTGCATTCTCTCGGATATGTGTTCTAAAATCTGAACTAAAGGTTTGCTGTCAGATTGGTAAATTAATCTGAATTGAGTTTGACACATTGTCAATCTATATAGGGGTATAATAAATGTATACCCTTTTTTTGTGTTATACATAAGGCTGTGTATAAATGTACGTTTACACATCCCCATGAATTCTGGGTAAAAAGCATTCTAATTGGAGAGAATATACTGTATTGAtagcaaaatatattttgggcAAAGCCAGCCTGTCCCCTTATTCCCCATTTAGTGctctacatttgaccagagccctatttaccttggtcaaaagtagtgcacttaatagggaataggttaccatttgggatgtatccgCTGTGTTTCAGTGTTGTTGAGGAGTCTGGATGCAGCAGGTGACTTTGAACAGTGACAGACTGACTGTGTGTTTGACCGGTCTCGTAACGTACAGTGTAAGTGCTGTGTGAACAAAATGAGCAGGAATCAACAAGGAAAAGCTTCATATATAATATATGAGGTATATTCCTGATATATGAAGATAATTCTGTTTGAATCGAGGACCTCGATAAAAGCATACACTGTTCTGTACAGTGTCGTCTTTAATCGTCCGGCATTGATGACTAAGGAGTTTCCTAACGGAAAACTGTATGAAAAAGTGTCCATACACACTCAAAGTCTTCACAAATTAAACTTTTGCAAAAGTGACCTTGTTCTTAAACAGATAAGTCTACACGCAACGACTGACTTTTATATTTGTTCATTTGAAAGCACAAAGTTATGATTAAAAGTTTGACTATTTTCCTATTGTTACATTCAAACACATTGCTTCTTTATTCTCTCTATGTTGAACCGGTGATGTCCTTTTTTTCAGCCTCTTTTTCTGTGATACATAGTTTAAGGTATCCTAGGATATACAGTGCTATGTACATACATACGTAGTACTCCTGTAGCATACAATGAACTAGCATGCCTTTATATGTTTTTCACAAGCTGTATGTAGCTGAAATTGGACTGTTATTTTAGCAAATTTAAAATGTGACAACTGAGGTAAGCCGCTTTCAAATTTTTTGAATAAAATTGAAGTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1846874 lncRNA downstream 6117 31723040 ~ 31724710 (-) True G1613704
TU1846823 lncRNA downstream 75363 31653666 ~ 31655464 (-) True setd3
TU1846856 lncRNA downstream 78048 31652039 ~ 31652779 (-) True G1613689
TU1846853 lncRNA downstream 84954 31645641 ~ 31645873 (-) True G1613686
TU1846845 lncRNA downstream 92260 31638360 ~ 31638567 (-) True G1613680
TU1846955 lncRNA upstream 93803 31831501 ~ 31832436 (-) True G1613770
TU1846983 lncRNA upstream 124236 31861934 ~ 31863457 (-) True G1613798
TU1846993 lncRNA upstream 144650 31882348 ~ 31882886 (-) True G1613804
TU1847057 lncRNA upstream 196956 31934654 ~ 31938245 (-) True G1613850
TU1847083 lncRNA upstream 241642 31979340 ~ 31980194 (-) True G1613876
XM_021573909.2 mRNA downstream 13220 31653662 ~ 31717607 (-) False setd3
XM_036954643.1 mRNA downstream 13220 31653662 ~ 31717607 (-) False setd3
XM_021573911.2 mRNA downstream 13276 31653662 ~ 31717551 (-) False setd3
XM_021573910.2 mRNA downstream 14407 31653662 ~ 31716420 (-) False setd3
XM_036954640.1 mRNA downstream 101773 31571477 ~ 31629054 (-) True bcl11ba
XM_021573917.2 mRNA upstream 76768 31814466 ~ 31819417 (-) False haus2
XM_021573918.2 mRNA upstream 76768 31814466 ~ 31819888 (-) False haus2
XM_036954647.1 mRNA upstream 76789 31814487 ~ 31822631 (-) True haus2
XM_021573927.2 mRNA upstream 249777 31987475 ~ 31994210 (-) True jmjd7
XM_021573931.2 mRNA upstream 275488 32013186 ~ 32061219 (-) False fbxo34
TU1846340 other downstream 266931 31463121 ~ 31463896 (-) True G1613218
TU1844494 other downstream 1695145 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 1775041 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 1844137 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 2940414 28789421 ~ 28790413 (-) True G1610194
TU1847001 other upstream 278502 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 720832 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 913228 32650926 ~ 32657769 (-) True G1615357
TU1848792 other upstream 1034219 32771917 ~ 32775704 (-) True LOC110497688
TU1849224 other upstream 1674521 33412219 ~ 33413217 (-) True G1615793

Expression Profile