RNA id: XM_021573932.2


Basic Information

Item Value
RNA id XM_021573932.2
length 4139
RNA type mRNA
GC content 0.53
exon number 3
gene id fbxo34
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32013186 ~ 32062575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTtgtgtagctaacgttagctagctattaacAGTGCTCACGTTCGTTACTTACTAGTCGAGGTTGGTGGCGTGGAAGACTGCTCTGCATTTCACTTTAGTGCGGTGGATGGGACCCTGAGTTGTGAGGTCATCAGATCGTGGCCTGCAGGGGGTTGTGGGAGAGACACGTCTGTCACCACACTGGACTGGAGGGAGAAGCTGAATTCCTGAGAGATGTGAATCTACCGCCTCCTCTCACAGCGAACATAGGAAACCACCATCCAACCTGCTGCTGTCAGCCTGGAGGGCTGCAGCCATGCACCTCAAGCCATACCCCAAACTGCAGAagaaagagttctacctggagtCCAGTCACGACAGCCAGAGAGGCCTTCACCATATGAGCCAGCAAGGGGCCCTGTCTCTGAGGACAGAGTGGGGGGTCCGTCCAGCCCTGGTGGGCTCGTCTAGCAGTGGGCTCGGCCCGGGCACGGCCCGGTCCCCCCTTAGTGTCATATCCACCAACACCCGGTGCTGCAGTGACGGCAGTAATAGTACCCACGGCAACAGTGGTAGTGGGCTGCAAACCTCAAGGCTGAGTGGGTCTGGGGGAAATGTATTCCACAGTAGTACAACCTGGGCCCGGCGGAAAACCTCAGAAACCTCCTACACCACCACCTCGTCCCTGCtgctcctccccacctcctcctgcaCCTCCTCTACAGGCTCGGGGGGATCTGAGAACCAGGAGGCCTCCCTCAGCGTCTCCTACCAGGGGGAGGACGGAGAGGGACCGCTGGACATCTGGGCTGTCATAAAGCCCGGCAACACCAAGGAGAAAATCGCCATCTTCGCCTCGCCCCAGTGCCACGGCAGCCTCGTGAATGGTGGCGGTGGAGGAGAGCCGGTCAGGGAGGCGCGTGAGGGAGACTTGGTGAGCAGCATCTCAGTGAGGACAGTGTCTGTGAAGATGAAAAGCTGTTGGGAGGATGAGGGTGGCTCTGTGGCCAAGCGCAGGAGGAGGTCAGGGCATCGGGGCCACCACCAGGACAGAGACCGACAGTCACCCAGAGCTCTAGAGAGACAGAGCCCACTGAGTCCCACAAAGAACAGCCCAGAAGAGGTGACCCTTGGCGAGAGCCCTAGAGTGCCTGAGTGTGGGGTTGTAGGGGTGGGTGGGGAGCAGGTATGTAGGGTAGAGGGCGAGGAGGGGAGTGAGACTGGGACGGGCAAGGCTCTCTCTGTGGTGGAGTTGGTGGCCGCCTTGGAGCAGAGAGCCAGCGACAAGCAAGGGGACTCTAAGCCTGTCTCTCTGCGGAGCTCCACAAGCATTACCTTATCCAGGGGGCTGTCACTGACCCAAGAGCCCCAGCAGCCCAAAGCCCCAGACCAGAGCCCCCAGGGGACAGATGAGGCAGAGTGTGTAAAGGTGTCAGACATGGTGGCCAAGCTGGAGTCAGAGTGCCTGAAGCGCCGGAGTGTTCCAAGGGAAGGGTCCGGATCTGGGGGAGAGCTGTCGCGCAACAACAGCCTGCGGAGGAGGGTGGGCCGGGTGTTACTGGCAGGAGCAGACGCCTGCTCCATCTCAGCCCAGCCACCTCCGTCTCCCACTGGGCCCCAGCACAGACTAGAGGAGACCACGGGGGTGCAGCACCTCCACGCTAGTCCATCTGAGGGCCGTCCCTCTGTTAGCACCATCCACACGGACAAACTAGTTCCCAGCAGCTGCCATGAAGCTTCCCACTGGGCTTCCCGTTCCTCTGACCCAGCTTCTCCGTCTCACAGTGTGGACTCTGGGTGTGGAGCCTCCATCCACGCTGTCAGAGAGCCAGAGGAGATGTGTGAGGCCCAGGGACAGCAGGTGGGGAGCAGGGTCATTGAGGCTGGGCAGGATCTGTACCTCCAGCTCCAGTCAGAGCGGGCCAGCAGCAGTCTACAGAGTGAGGAGCCCCTCCCAGGCATGCTGTTCTTCTCACACCCTCTGCCCTCACAGCCGGTGCTAGAACAACACAAACTCCCACACCCAGACAGTACTCGCACCCAGGACACTGGGTCCAGCCCTCAACACACCAGAGACTTAGCGGAACCCTCCAAGCCTCAGCCCTGCGACCCTGCtatcacctccctcctccctgaaACCATATCGCACAGTGAGAACTGGGCcaaagaggaggatgagaaggcggtgagtgagggagaggggagtgcTTTTAGCCAGTGTGAGACCGTGCCTTTCCCCCTGCGCCGCCTGGTGTCTCACGAGTTCCTGGAGATGCGCTTTAAGATCCAGCTGCTCCTGGAACCCCAGCAGTACATGGCCTTCCTGCCTCACCACATTATCGTTAAGATCTTCTGCCTGCTGCCCACAGAGAACCTGGCAGCGCTTAAGTGCACCTGCCACTACTTCAAGTTCCTCATCGAGAGCTACGGAGTTCGACCCGCAGACTGCCGCTGGGTGTGCGACCCCCGCTACAAAGACGATCCCTGCAAGCAGTGTAAAAAACGGTATGGGCGCGGGGATGTGTCCCTCTGCCGCTGGCACCACAAGCCCTACTGCCAGGCGCTGCCCTACGGCCCCGGGTACTGGATGTGTTGCCATGGTTCCCACAAAGACACGCCCGGCTGCAACGTCGGTCTCCATGACAACCGCTGGGTGCCCGCCTTCCATAGTATCAACATGCCAATCTATAAGAAACCCAGGGCGGTCACTGAGGAGTAGTGGAATAGACAATGGGAGAAAGTGATTTGACTTCTGTGTGCTTTATTTTGCCAATGAGggctttgtgtgtctgtgttgccaTATGAGCATGTGCAGTTATTTGTGGGGAGTGTCTGACCGCAACCAGGTTTCTGGTACTGATGAGGAATCACTGGATCTCTTCCTTGACCCCTAAccactgacctctaacccctcctCAGGTCCTCTGAGATGGTCAGCACTTTAACCCTGGTCATAGTTCTCAATCTTCAAAGGATTCTGACAGGGTATTCTTTTTACTTGCTTCGATGTGTTGGGTTAAAACATCTGGTTCTGACCAGAGTGTGTTGAAGAGAAGCTTTGTTTCAGATTTCTCTTCAGTGTTGATGCTTAATGTGTCTCTCCTTGCCCACAGCCATAATGTTTCCTTGCTTATGCATTAACCAATACGTTGGGATAGCTATTTTAGTCAAGGTAAGCCTATCAACGTTATGCAGTATACCCCACCCACAAGTGTGATTTACTCAGTGTTAATGTGTTGTTGTCTAAGTGGATACATACATTGCTGCAGGTCCCCGGTTTATGCAAAATGTGAATCAACCCCATCCTATATCCCCTCCATAtcctgttccaaatggcaccctagtccctatgtagtgcactacttttgaccagggcccatagggtgccgtttgggatgttGGAGTCTATATCCCAACTCAACTGTATCAGTCTCCGGGTCAGAGAGGGAAAGGGTTTTGTCTGTCCTGTATCTGGTTTGATTGAAAAAGTTTGTTCTGAGCCCTGTTGTGTTTACATTGTACGTAGTGCTACAGAGTCCTATATCAAAAACAAAGTGAGGAAGATTGACAAGCAGCACGAGTATCTATGACTTGAATGCATTTATCTTCAGTTTGGTAAAAAGAAAAAAGTTTATTTTGACCCCGTCATGTATATATTCATGAATGATTATTATTGGGTGTTTTACAATGGGTCCCAGATGTATAACCCATATGCTTATTTGGCCGCTCTCATTGCATTATTCTCCACCATTTTTAATgtgcgtctgaaatggcacagtattccctatatagtgcaccacttttgaccagagcaatagggctggtcaaaagcagtgcactataaatggaatagggtgccatttttggACAAGTGCTCATCCCTCCTTTTTATGATGCTGATATTTCTTGAAGGGAAACATGCCTGGAGAAGTTCCCCTGTGTCTGTTCTTTACCATGATTAACTGGACATGATCTAAAAAACTAAACACAAGGAAAACAGGGTTGATTACAAAGGGGGAGAAAAATGGTCTCTAAAAGTAGTTTGCCTccagatatttttttaaaacagttTGTTGTATAATATTCCAGCTGTACTCTGCCTGCAAAGGCATTTTACTACAATAAAGTGTATTCATTCTGAGGTTAACTGTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1847002 lncRNA downstream 5959 32006442 ~ 32007227 (-) True G1613813
TU1847102 lncRNA downstream 10724 32002226 ~ 32002462 (-) True G1613884
TU1847101 lncRNA downstream 11682 32001174 ~ 32001504 (-) True G1613883
TU1847098 lncRNA downstream 12798 31999922 ~ 32000388 (-) True G1613880
TU1847083 lncRNA downstream 32992 31979340 ~ 31980194 (-) True G1613876
TU1847134 lncRNA upstream 31237 32093349 ~ 32093618 (-) True G1613915
TU1847138 lncRNA upstream 36279 32098391 ~ 32098686 (-) True G1613919
TU1847155 lncRNA upstream 68994 32131106 ~ 32131311 (-) True G1613936
TU1848445 lncRNA upstream 119219 32181331 ~ 32181607 (-) True G1615089
TU1848447 lncRNA upstream 120472 32182584 ~ 32182784 (-) True G1615091
XM_021573927.2 mRNA downstream 18976 31987475 ~ 31994210 (-) True jmjd7
XM_036954647.1 mRNA downstream 190555 31814487 ~ 31822631 (-) True haus2
XM_021573918.2 mRNA downstream 193298 31814466 ~ 31819888 (-) False haus2
XM_021573917.2 mRNA downstream 193769 31814466 ~ 31819417 (-) False haus2
XM_036954646.1 mRNA downstream 222378 31733012 ~ 31790808 (-) False ccdc85ca
XM_036954653.1 mRNA upstream 2386 32064498 ~ 32068821 (-) False lgals3b
XM_021573937.2 mRNA upstream 2386 32064498 ~ 32068901 (-) False lgals3b
XM_021573936.2 mRNA upstream 2386 32064498 ~ 32069010 (-) False lgals3b
XM_021573935.2 mRNA upstream 2386 32064498 ~ 32069030 (-) False lgals3b
XM_021573933.2 mRNA upstream 2386 32064498 ~ 32077555 (-) True lgals3b
TU1846906 other downstream 205939 31719922 ~ 31807247 (-) True G1613722
TU1846340 other downstream 549290 31463121 ~ 31463896 (-) True G1613218
TU1844494 other downstream 1977504 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 2057400 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 2126496 29886345 ~ 29886690 (-) True G1611350
TU1848607 other upstream 396418 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 588814 32650926 ~ 32657769 (-) True G1615357
TU1848792 other upstream 709805 32771917 ~ 32775704 (-) True LOC110497688
TU1849224 other upstream 1350107 33412219 ~ 33413217 (-) True G1615793
TU1849241 other upstream 1416481 33478593 ~ 33479436 (-) True G1615810

Expression Profile