RNA id: XM_021573938.2


Basic Information

Item Value
RNA id XM_021573938.2
length 3502
RNA type mRNA
GC content 0.51
exon number 4
gene id dact1
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32189627 ~ 32205732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGCTACCACAGAGAAAGTAGATGGGTCTCTAAAGAGAGAGGTGGTCCAACGCTACTCACCACTATCCTCAGAACGCTGCGACCTGCATGACAGAGAAATAGCTACACACTCCCTATTTAACATTACACTAAAACTTCGTCGTTTTCACCATGCAACTTTTTTCGATTTGTTCAAACTGAAAAGCACTGagatttgttgttttattttggAGGCCCGGATACTATTTGGACAACAAAAAGGACCGATTTTACGCACGCAGTTTGTATCGGGATAACTGCTTCAAAAGACAGAATTTATGGACAAGTAATTTAGTGGTCGGTTAGGTTAGACCGTGGTATGTGCGTCCATCGGTCAACGTTTTTGATGCACATCATGATTTTCTAAACTCTTCACAGTGAATTTATGTGGCCCGCTGTTGCCAGTTATATGTTGTAAATCATTGTCGCTTGTTGGATGGATACAATGAAACAAACGGCTGCTGGTGCAGAAATGCTGGTCTCCAAGGATTACACATTACAGATGCGGGATAGGAGAGAATGCGATACGCGCTCCAGGGAAATAATGGAGGAAGAGATTGGTCGTGTGCGAACTCGGGAGAGATTGGAAGCCACTCTAGCGGGTCTTGGAGAGCTGGAATATTTGCGACAGCGGCAGGATTTACTGGTCAGAAATGTGTTGAATCGCCAAGAGGACTCTATATCACCAGGAGAAGATCCAATGTGCGTTACGCATGAGGAGAATTACTTGAACTCGGAGGAAAAACTTTTAGAAGAAAACATTTTATTGCTAAGAAAACAACTGAACtgtctgagaaagagagatgctGGTTTGATCAATCAGCTGCAGGAGCTGGACAGGCAGATCAGTGACCTCCGATTGGACACGGAGGCATCACATGAGCAAGTGGAGACAGACAGCCGCCCAAGCTCGGGTTTTTACGAGCTGAGCGACGGAGCTTCGGGGTCCCTCTCCAACTCCTCCAACTCGgtgttcagtgagtgtttgtccAGCTGTCGCTCCAGCACCTGTTTCTGCAGTCCTCTCGACACATCACTGTGTGCCTCCGAGGGAAGGCTCAAATctgcagATGAGCTGGGCAGCTGTGCTGACTGTGAGAATCAGTGTGCGGAGCAGCAGACCATGGGGACTGCTAGAAAGTCGCTCCCCGCTCCCTACTCCCCCTCTACGGACGCCTCTTCCACCACTCAAGACATCCAGTCTAAGTACCACTGTGACCTGATCGCCAAGAACGGCAGCGACGTGTACCGCTACCCCAGCCCCCTCCATGCCGTGGCTGTACAGAGCCCCATCTTCTTCCAGTCTCTTGCCGGCCATATCAAAGAGGACGGGGGGCTATCAAAGAGCAGCGGAGGCGAGGGCTTCGGTGACTGTCAGAAACTAAAGCAGCCGCTGAATCTGGTGCCCCAGAACATTTCTTGGCCTGCCTCCCATGCGCCTACCAGCAAACGACTGGACAATTATATATTCAGCCTGCTTCAGAGGAGGGCTCAGCCCATTAGGACCAATAAGCCGCGGACGAGCATCAGCACAGACCCCTCTAAGAGCATCCTGAGGCAGGGCAGCTTGTGTGTGAGACAAGCTACTGTTGCCCCGCAGCAGCAAGGAAGGACTGCTGCTCCTCTTCCTGATCTCAAACCAGCCTGGCAGATGTGTTTACATGCAGGTGGTGCCAGTAACACTGATCCAGGAACAGGCACCTCACAGAGACAGTGGTCAGTGGAGAGCAAAGGGGAACTCCTCTTAGAAAATGGGATGGTGTCCCAGTCTCTGGGCCAACCTCAGAACGGCTGTGCCACAATCGACGGCAGTGACATTCACACCAACAGCCTGGTAAAAAAGAAGGGGTCTGTGTCATCAGCCTATAAAGGACTTCCATCGGCAACCGGTCCTCTGTCTAAAGATTATCAAGACTTGGGTACCCCAAATGCCAACTCCTCACCCAAAGAGAGCAAGCATCCTTATTTCCCTGCTGCTCCAGTGGACATCAGTACTAAACCCCCCCAGACACTCCCTAGAGACCGCACCAAAACAGGCACTCCCAAGAAAAGCCCTAAGAGCATCCTGGTCTCTGTCCAGACAGCCCAGACCACTAAGGAAGAGAGGCCCATGCTGGAGCTGGTGAGTCTAGGGTCTTCCTCCCAGAGCCAGGATGAAGGTCAGGGTCACATGGTCAGTGCCCAGTACATCCCTGCCCAGAGGCAGACTGTCAAGCTCCGCAAAGCGGGCAAGAACATCAAGATTGTCAAGGTGAAGAATGCCTCTCTGAAACAACACAGAGGGGTTCACGCACACGCTGAGCCTGTGTTATCCGAGGCGACAGGGGGAAGGGAGAAGGGTCACCGATCTGGAGGGATGAGGAAGTCTCGTCAGCCTGAGGAGGTACAACACGTGCACAAAGTCTCCTCCAAGAGGGGGGCGTCCACCAGGGCCAAACGCACCATCCCTGCCTCCATTCCTGAGGGCCGGGTCCTTGAGAAACACACGGCCACAGTGTCCACAACCAGGTCCACTGTGTCCAGGCATCATGGTCACCATGGCAGGGAAGTGGTGGTGGCCAAGCCCAAGTACAAGAGGACAAGCGGACATGACTACAACCGAGGAAGGCTGAAAGCCATCACTGAGGTGCCTTACGATGAGGCCTTTAGGAGAGCCCACCGCAGACAGAAGAGGGAGGTCCTCGGCCAGGTCTCCACCACCACGTACCTACCCTCCAACGTGAAATTTGCCAGCCCTTATGCCTATGTGGCTGGCAGCGACTCTGAGTACTCCGCAGAGTGCGCTTCGCTTTTCCATTCCACCATCGTAGACACCAGTGAGGATGAGCAGAGCAACTACACCACCAACTGCTTCGGGGACAGCGAGTCCAGCCTGAGCGAGGTGGACTTTGTGGGGGAGAGCACCACCAGCAGTGACTCTGAGGAAAGCGGAGGGATGAACTGGCCCCAGTTTTCAGGGCAGGGCGCTGGGCATCATGACTTAACCGCTGCCCAGGCTAAAGCCTTCATCAAGATCAAGGCCTCTCACAACCTGAAGAAGAAGATCCTCCGCTTCCGATCGGCGGGCTCGCTAAAACTGATGACGACTGTATGAGGAAGGGACTTCAGGGTGTCAGGCAGGAAGCAGTGACTCCGCCAATCAAAttggccactctctctctctgcccaagaTCAAGTGCCtaggcagattttttttatttacagaaaGTCTTTACTGAAATCAATCTCAGATGTTTAAGGAAACATTTAATTGGGATGCAAGGATTTGTACAAAATGTCCAGCAGACTCCCTCTCCCTGCACTTTCTGACAAACGATGGACAAGGTGAAAAGCATCTAAGGAGCCCCCATTTTTATTTTGTTGTATGTAGaggtttttgtatttattatggacatTACCCTTGCTGTGGTACATGGCAAAAATCTGTACATGCTTTTAATGTTCTTGGTTTACTTTTTGGATTAAAGATATTTCTAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1848429 lncRNA downstream 281 32188202 ~ 32189346 (-) True G1615073
TU1848450 lncRNA downstream 2166 32187227 ~ 32187461 (-) True G1615094
TU1848447 lncRNA downstream 6843 32182584 ~ 32182784 (-) True G1615091
TU1848445 lncRNA downstream 8020 32181331 ~ 32181607 (-) True G1615089
TU1847155 lncRNA downstream 58316 32131106 ~ 32131311 (-) True G1613936
TU1848459 lncRNA upstream 9439 32206586 ~ 32206874 (-) True G1615103
TU1848466 lncRNA upstream 15286 32212433 ~ 32212664 (-) True G1615110
TU1848470 lncRNA upstream 18549 32215696 ~ 32216053 (-) True G1615114
TU1848491 lncRNA upstream 35817 32232964 ~ 32234351 (-) True G1615128
TU1848513 lncRNA upstream 69227 32266374 ~ 32266918 (-) True G1615148
XM_021573933.2 mRNA downstream 112072 32064498 ~ 32077555 (-) True lgals3b
XM_021573935.2 mRNA downstream 120597 32064498 ~ 32069030 (-) False lgals3b
XM_021573936.2 mRNA downstream 120617 32064498 ~ 32069010 (-) False lgals3b
XM_021573937.2 mRNA downstream 120726 32064498 ~ 32068901 (-) False lgals3b
XM_036954653.1 mRNA downstream 120806 32064498 ~ 32068821 (-) False lgals3b
XM_036954655.1 mRNA upstream 25350 32222497 ~ 32369182 (-) False kiaa0586
XM_036954656.1 mRNA upstream 25350 32222497 ~ 32369182 (-) True kiaa0586
XM_021573941.2 mRNA upstream 148761 32345908 ~ 32349044 (-) True irf2bpl
XM_021573940.2 mRNA upstream 179119 32376266 ~ 32398733 (-) True arid4a
XM_021573949.2 mRNA upstream 203768 32400915 ~ 32414594 (-) True LOC110497673
TU1847001 other downstream 127133 32016200 ~ 32062494 (-) True fbxo34
TU1846906 other downstream 382380 31719922 ~ 31807247 (-) True G1613722
TU1846340 other downstream 725731 31463121 ~ 31463896 (-) True G1613218
TU1844494 other downstream 2153945 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 2233841 29947400 ~ 29955786 (-) False G1611392
TU1848607 other upstream 261383 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 453779 32650926 ~ 32657769 (-) True G1615357
TU1848792 other upstream 574770 32771917 ~ 32775704 (-) True LOC110497688
TU1849224 other upstream 1215072 33412219 ~ 33413217 (-) True G1615793
TU1849241 other upstream 1281446 33478593 ~ 33479436 (-) True G1615810

Expression Profile