RNA id: XM_036954671.1


Basic Information

Item Value
RNA id XM_036954671.1
length 8074
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110497688
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 32770921 ~ 33161896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACACGCGCTAGGAATGGCATTGCTGCACACTACCAgatcacacaacaacacagtctaTGGGAAAATTCACACAGACAGCAACACGCTTATTTACAAATTATCCGATGCACATTAGGGCATAGCAAGTTGAGGAAACCTGTACCGGAGACACCTCACAAAAACAACAGCACATACAGATAGATAGAGCACCAGTCAgtcaagaggagaggggggttcaGTCCTTCAAAGAAAGATAAGAAAATATCACACTTCAATTGTTGGAGAAAAACTGAACGCGTCAGCGTTATTTGGAAGTTTTTTTGAGCGATTTTTTTTGCATACTGGCCTATCATCACATCTCGGCATCCTTACAAATAGCATCGGTCCACTTTGGAAGTGACGAGTGTGCCAACAATAGTGAGGACGCGTTTCCTGCCCCGCACACCACCGGCATCAATGTCATTGCTAACCTCCTGAAAGCTGCAGTTGTCTCGTCGCTGATACAGAGAGAAATCCAGACATAGAATGGCCGATGAGCTGGTGACCATCACTCATGGGATTGTGGTGTGACTTGTTCGGCTGGAGGGAAGACTGCTGATATTCTTTGAAAAATCTTCATAGACTCAGTGCGTGTTCAATCTACCAGAGCAGGGATGATCAGGATCTTCCCGGATTTCAGCGTTCAGGTGACGGCGGCAGGTGGAGGAGCCGGGGGAATGCCATCAGGTCCTGCGGTGGGGAGAATCCCCGGTACCACTAACGGGAACCCGCAGAACGTCCAGGGGATCACGTCCTATCAACAAAGGGAAATTAAAACCCTACACCCTTTCTGCATGGAGGGATCAGAGGAGGAGGCCATAGTTGATGCCCAATTCATGTCCAAATTCCCCCACGACCCTTACTGGGAGAGGCCTGCTAATGCCAGCTCCTGTTCTGCCTCTAGGCCCAAGACACTCCACCTTGGAGGAGGGCAACAACATACCTCATCGCCATGGTTGCAGGCTCTGAGGAAGGAGAAGTCCCGGGATGCGGCTCGCTCGCGGCGAGGGAAGGAGAACTTTGAGTTCTATGAGCTGGCCAAGATGCTGCCCCTGCCCGGCGCCATCACCAGCCAGCTGGACAAGGCTTCCATCATCCGCCTCACCATCAGCTACCTGAAGATGAGGGACTTCGCCAACCAGGGGGACCCGCCATGGAACCTGCGCATAGAAGGCCCACCACCCAACACCTCCGTCAAAGCTATAGGAGTACAGCGAAGGAGGACTCCCAGTGCAGTAGCCTCAGAGATCTTCGAGCCACACCTCGGGAGCCACATATTGCAGtcccTGGATGGATTTGTATTTGCACTAAACAAGGAGGGGAGGTTTTTGTACATCTCTGAGACGGTGTCCATATACCTGGGACTTTCACAGgtggAGCTGACAGGCAGCAGTGTGTTTGACTACGTCCACCCTGGCGACCACGTTGAGATGGCAGAGCAGCTGGGCATGAAGCTGCCTCCAGGCCGAGGCCTCCTCTCTCAGGGCACTGCCACAGAGGACGGCGCCagctctgcctcctcctcctcacacgcAGAGACCCCCGAGCCAGTTGAGTCCACCAGCCCCAGCCTGCTTTCCCCAGACAACACTCTAGAGCGCTCCTTCTTCATCCGTATGAAGTCCACACTGACCAAGAGAGGTGTCCACATCAAGTCTTCAGGCTACAAGGTGATCCATGTTACAGGCAGGCTGAGAATCCGGATGGCATTGACCCACAGTCGGTCTGTACCCATTCAGATCAtgggcatggtggtggtagcccacgccctcccccctcccaccatCAACGAGGTGCGCATAGACTGCCAAATGTTTGTCACCCGGGTCAACATGGACCTCAACATTGTCTACTGCGAGAATAGAATTAGCGACTACATGGACCTGACGCCAGTGGACATCGTAGGGAAGAGGTGCTACCAGTTCATTCATGCGGAGGATGTGGAGGGTATCCGGCACAGCCATTTAGACTTGATAAACAAGGGACAGTGTGTGACCAAGTACTACCGCTGGATCCAGAAGAACGGTGGGTACATCTGGATCCAGTCCAGTGCCACCATCGCCATCAATGCCAAGAACGCCAATGAAAAGAACATAATCTGGGTCAACTACGTACTCAGTAATCCAGAGTACAAGGACACGCCCATGGACATCGCCCAGCTGCCCAACCTTCCAGAGAAAGCCTCTGAGTCTTCAGAGACTTCCGACTCTGAGTCCGAGTCCAAGGAGAACTCTGACAACGAGAACTCGAAGTCGGACGGGAAGGGGAACCAGACTGAGAACAGCGAGGACCCGGAGACAGACAGTaaaaagcagcagcagggccAGTCGTCCTCAGAGCAGGAGATGAGGCGTCAGGAGGAAGGAGACAGCTCCTCCAACCCAGAGAGCCAGGAGAGCGAGGATGACCTGGAGCCCAGTGACTGCGAGCTGGAGACCAAGGAGAGGAGACTAGGCCGACTGGGGGGCCTGCACATCAAGGTGGAGCACTACggagatagagatggaagagTGGAGCTGCACAACTCGCCGTCctcctctgaagaagaggaagatgatgacgatgatgaggaggatgatgatgacgaCGACAGCGTTAAAGACTGTGACAGGGCCACTGAGATGCTCGCCGTCCCCGCCGCCAGCAAGCAGCAGAAGCgtaagaagaggaggaaaaagcAGAAGTGGGACGGTAGTCGTTCTAGACGCCTGCGCCTCTCCTCTGCCACCACCAGCCCTTGCAACATGAACCACCCCACCCTGGGGGGGGACGCCCCCCTCCTGCTGCCCCCCTCCCCTGCCAGTGCATCCGTGCTCAAGATCAAAACAGAAATGTCCGAGCCCATCAACTTCGACAACGACAGCAGCATCTGGAACTACCCTCCCAACAGGGAGATCTCCAGGAATGAGTCCCCCTACAGCATGACGAAGCACGTCCCAACCCACGACACCTTTCCCTCCCCACAGCCTGGCAGTCTGCAGGTCTCCATCCCAGACTCAGTGCTCACTCCACCAGGAACAGAGGGAGGCGGCGGCGGGGGTGGAGGAACCAGGAAGGGCGTACCCCCCTCCTTCAACGGTAACAGCAGCGCCCCCTCCTCAGCCTCCAGTGTGGCCAGCCTGGCCCCTCCCTCCAGCTCTGGCTCCTCCTCCGACCCCCTGTCCCCACCCCTCTCAGCCTCGCCGCGCGACAAGCAGCAGGGTCAGGGCACCCCCACCAcctccaactcctcctcctccctgctgtacACCAGCGACCTGGAGGCCCTGCAGAGGTTGCAGGCTGGGAACGTGGTGCTTCCTCTGGTCCACCGGGTCACCGGCACCCTCGCCACGACCAGCACTGCCGCCTCCCGGGTGTACACCACTGGCACCATCCGCTATGCCCCCGCCGACGTCACCTTGGCCATGCAGGCAGGCGCCAACCTGTTGCCCAACAACGTTGCCCACGCTATGAACTTTGTGGATGTCAACGGTAGCCCCGGCTTCGGCATCGACCCCAAGACGCCCATGGAGATGCTGTATCATCACGTCCACCGACTCAACATGGCTGGCCCCTTTGGCGGTGCCGTGTCCGGCGCCAGCCTCACCCAGATGCCAGCAGCCAATGTATTCACCACGGCAGAGGGACTGTTCTCTACTCTTCCATTCCCTATCTACAGTAACGGGATACACACCACACAAACTCTGGAGCGCAAAGAAGATTAGAGCAAAACACCAAGACCATATTACTGTGTTCAACTGTCAGAGACTCGTTGAGGCATAAGACTGTGTTTCAagtggaaaataaatatattcTAGCACTTTGAATTTGAGCAAACGAGCTTATATAATAGAAATGAATGGCTCCTTGTCTTTCTATCTTTTCGCTCTCTCTACTGACTCCCACTCTATCAATCTCTCGCCCTCTTCCTACTCCTCTTACAGTACGATGGACATTTTCTCTGATCAAACTAAACGAACTATTCTTTATTGTAAAGAATTCCTTTTTGCCTACAGAGAATTCATATTACCGTTGGTCTCCTACTGGAGTCTTGGGTAAACTACTTTTTATTTGAGTTGATTATGTTGCATCTTTATGAAGATGCCTAGTGTATTTAAAGGGTGATGGCGGAAAAGATATTTCTATGGAAAGAAACCCCTTGGATGGTTTTGCTCCACATCTTGATGTGATCAAGGTTGACGAAGACAAAAGGATGGTCCCTGTTTGACATGGTCATAGACATAACCTTAAAAGAAAGAGATTTGAAAGTTATTTCATAATGAGGGAATAGTTGTCTATTTTAGAATTAATtttgattcttttttttttatagctcAGATTTAACTTGCAAATCAAGCATTAAAAAAGCAATTTCAGCCGGGTATTGACCTGTGAATAGAATGTTACTACAAATCCCAGGACTTTGGAACACGAGACAGGTCAGTACGAGATATGAGTATTCTCCCGGTTCCATTTCCTCGGttttgtctcaaatggcaccctattccctttatagtgcgccacttttttttttaccagggcctatatggctctggtcaaaagtagtgcactctatagagaatagggtgccatttgggatgcacgcCTTCTCTGCAGTTCCATGGTGCTACTGTTCCATCTAGTTACTACCCTCCTTCAGCAGGCTGATGTAGGTTATTCTGTTCCACAGCTCTCTCTCAGAGATGAGTGATTGAGTGACAGCTGGGGAGATTTCCTTCCTTCGGTAAAGTCAAACCTCTAATCAACATATTTTCATGTTCATTACTACTCCCCTCAGTCAAGTTGTTTGAAAGGCTCGGTCGGATTGGGCCCGAAGGATAGAATATACCTATATGGAGCAGGTTGAGTTTGGTTGTATTTTTTCAAAACTAGATCACTTTTTCTCAGTGTAACTGAGGCTAATTTGCGTCATTAACTTGAAAAATGAATGTTTAACTTTGACCGGCTTCTGTCAATTGTTTTTTCTActctacccttcctctctctcttccatcctaaACCTCACTACTATCAACAACAGTCTCCCAAATCTGTTCTTCCATCAGCCATTGTTGGACTCTCTGAAATCACATATCAAGGAGATTGTAATAAGGACATGCATTTCAATCAAACGGAATATgagtttgttttttttaattccCACATTTTTTCTCTGTTGCCAAAAAAAAGTTATTTCACAGTTTGGTGTTAAGAACACTGTgattgttgtttaaaaaaaatagtaataAAATGGAAAAACTGTCACTTCATCTTTTGACAGCCGTCCATCAAGTCATCTATTACCAAGCGTGATAACCGTAAACGTGTACAATGTGTAAGTGTCACTGGCTGTCAGTCTCCATAGCGATTTCAGTGTGTGTTACTATATGCAGTATATACTGAGCTGATGTAGCCGTTTTGTCCTTTGTCTTCTCTGTGCTTTATCTGTAGTCTGGGGTTGGACAGGGAACGTGTGTAACCCTCTCCGTCTCCTCTGCAGTCTTAGTGGACCCGTGGAGGTTAGTGGATTTCGTGTGGTGGCCTTCCaatgtagcgtcaccttttgctgcttCCTTCTGTCTGTATTTCTTTCTGTTTCTGCTGTTGCTTTGCTGTTGTGTAGTCTacagacctctctttctctcagagaTCAAAGTCTCTTAACTAGCTCAAAGGTTTAAGGAGCCATTTTTTTGCCACTGAGGAATTCTGGGATTACAGTTTCCAGCTTGCATTTACCTACACTACGAAAAATGACAACAAAAAGCTAAAAGTAGCATTTAGATGTATCTTCTAGACTGGAACCATAAAAGCCTCAGTTGTGAAACATTCCCAGAGTCCTTTGTGCTTCTTGTATGCATTGGGTGTATTTCATTGGTTTCCACCAAACCTGTTGACTTCAAGGACCCTGCAACTTACAGGACAAAAAGATCACGGTAGCATTTCAGGACAataaacaattttaaagatttCTAAAGAAATGAAAAGAAAAAATATTTCGCACTATAAATCTATTTTTATAGCTAGGTGTTTTGGAAATGCATGTTAATTAAGTTGATTGTTTGGTTTACTTCATTTTGTTCGGTCCAGCAGCTTTGTCTCAACGTTCAGTGTTTTTTAGTCTGTCCAGCAAAGGGAGGGGGAGCCTTTGTCTTTTGAAATGAATCAGGCTACTCCCCTACATCAGGAAACAGTGTCTGTGGTTTCTGTGAAGATGTGTTGTTACTCAAATCCAGGTCAtgaaataaatgtgtttttaaaaaaaagaacaaaaattGGGGGTCGGTTGGTTGGAACGGTGGAATGGTTGCAGGAGAGCGTAGTGTCACCACTTGAGATGGATTCTATCCTAGATGTTAGTGTTTTCTACGACGTCGCGAAGCAGGGTGAGAGTGGGAGACTGTCGGGTCGAGGGCAGCTCACTTAAAACAGACACTGTGGACGGACCAGGAAATACACCTATATGTTACAACAGAACAGCAGGATGAGCTGTTTTAATGTctctgtgactgtgttgtgtcaAAATGAATTGCTGGTGATTTAGACTTAAACTAATCTCAGCTACTGTCAGATAAATAGTGTTTAAAATTAAAATATGAAAAATCACTCCATTACCTGTGAAGACTGTGTCCGTGTTTTTAACTATTTCTTGTACAATTATACAGATTCTTTTATGAGGAACTTGGTGCCAAGTAGATGAATACTACAGGAGAAGGGGATTCTCTTAGTATCAGTGTTAACAGTGTTATAAATTCTAAATACAAACCAATTAAAATATTAAAAAGAGAAAACGATGGTAcacttattattttatttgttttatttttttctttgaaGAAAAAACACATAACTAACTGAAGCTAACTTTGAGTGCCTGgcttattttaaaacattttgaaaaacatctTTTTATTTTCATTTACCATGAATAATGCTGCAatttcagaaatgtacatactTCATTTTACAACAGGGTTATTTTATACTTTTGTAGGTTTCCATCCGTTTCAAAGAAACATGTCATACATACATGGTTGTTCTTTCTGTAACAAGTTTTTTTTACCATCTTACATGTGCCATATTCATAATAAACTTCTCTTGGATCTGTTCACATCTGGCATCATTTATTTTATTCAACCATCGCAATGACTATCCCACACCTCAGTGAGCTGCCTcaatttttctttctttctttatgccttttctttcttttctgatcttgcttgaaaaaaaaaaatgtgtactaGTCTTTAATGCTTTTCCTAGTTGGAAACTATGTTGTGGGAACATTGCTGGGACATCCATTCAGGTATGTTCACACTCAACACTCCTGCCGTAACGGTAGCTATGTCAGACCGCAGTCCTGGATACGCCAGGTCCATCCCCCTCCAATCAGAGGACTCTGTTAATGATTTCATGTAGTCTGATTGATCACATCGTTATATGATTGCGCAGAGGGTCAATCAGAGTGCAGCTAGTACTGTTTGTTGAAACATACAGTATGATGTTAGCTCACCCATGGACAGACAATACTGTGATAATGACCGAAAGACTGTTTAACAACAAGACAAATGAAGTGACTATCATCACATGGaataacactcacacacacatcattatCTTGGACAGACAATCTGACTATCTTGTCAATGTCACTGTGGTGTAATACCAGTTTAAAGCTGAAACTGTCTTTCAAACTAGCTATATCCTCTACAATGTTTTTGTCTCATTTTGTTTGCCCATTAGGCCTATCATGCCTAGAGCGAAATGCAGCTCGTGGAAATGCATTGAAAACACTGACGTCCTATTGAATGCCATAGTTATCCGGAGATACTGTATGTTTGATCCGAGTAATGAGACAACCAGACTAAGCGGCAGAAAATAAATGTGTAGAACATTTTAAACACTTTCCCCAGTTATTGCCGACAAGGCCTGTCTAGAAAAAGGATGCCCATGTCATCAACTGTCTCTCCATTGGTGATTTTGTAATGAGCATAATCTGTTGAGTTCATTTTTCATATTAAATGTGATAAATTACTAACGACATCTGTAATAAATGCAGTAAATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1848808 lncRNA downstream 10747 32758854 ~ 32760174 (-) True G1615414
TU1848740 lncRNA downstream 56877 32706604 ~ 32714044 (-) True G1615352
TU1848737 lncRNA downstream 120429 32649587 ~ 32650492 (-) True G1615349
TU1848686 lncRNA downstream 221739 32548916 ~ 32549182 (-) True G1615303
TU1848668 lncRNA downstream 241320 32529298 ~ 32529601 (-) True G1615293
TU1848797 lncRNA upstream 5260 33167156 ~ 33167370 (-) True G1615403
TU1848791 lncRNA upstream 5849 33167745 ~ 33168539 (-) True akap6
TU1849087 lncRNA upstream 9124 33171020 ~ 33171290 (-) True G1615665
TU1849088 lncRNA upstream 9762 33171658 ~ 33171960 (-) True G1615666
TU1849089 lncRNA upstream 10144 33172040 ~ 33172384 (-) True G1615667
XM_036954660.1 mRNA downstream 142867 32618859 ~ 32628054 (-) False srp54
XM_036954661.1 mRNA downstream 142867 32618859 ~ 32628054 (-) True srp54
XM_036954662.1 mRNA downstream 143388 32618859 ~ 32627533 (-) False srp54
XM_036954664.1 mRNA downstream 143396 32618859 ~ 32627525 (-) False srp54
XM_036954663.1 mRNA downstream 143433 32618859 ~ 32627488 (-) False srp54
XM_036954677.1 mRNA upstream 5847 33167743 ~ 33349804 (-) False akap6
XM_036954675.1 mRNA upstream 5847 33167743 ~ 33361397 (-) False akap6
XM_036954676.1 mRNA upstream 5847 33167743 ~ 33361397 (-) False akap6
XM_036954678.1 mRNA upstream 5847 33167743 ~ 33361399 (-) False akap6
XM_036954679.1 mRNA upstream 202567 33364463 ~ 33401224 (-) False LOC110497690
TU1848746 other downstream 113152 32650926 ~ 32657769 (-) True G1615357
TU1848607 other downstream 309342 32458530 ~ 32461579 (-) True G1615240
TU1847001 other downstream 708427 32016200 ~ 32062494 (-) True fbxo34
TU1846906 other downstream 963674 31719922 ~ 31807247 (-) True G1613722
TU1846340 other downstream 1307025 31463121 ~ 31463896 (-) True G1613218
TU1849224 other upstream 250323 33412219 ~ 33413217 (-) True G1615793
TU1849241 other upstream 316697 33478593 ~ 33479436 (-) True G1615810
TU1851431 other upstream 2230964 35392860 ~ 35396783 (-) True LOC110498336
TU1852753 other upstream 3239658 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 3492627 36654523 ~ 36768699 (-) True LOC110497753

Expression Profile