RNA id: XM_021574035.2


Basic Information

Item Value
RNA id XM_021574035.2
length 2732
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110497722
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35322742 ~ 35327947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAGCGACCAACACTTAGCTGGCGTGCCCGCGAGGAAAGGCAGTTACTGTAGCTAAGATGGCGGTGGCAGTGGGATCTTTGCAAGCCCAGCTTGAGAAAGCGAAAGAGAGTTTGAAAAATGTAGACGATAATATTCGTAAATTAACTGGTCGGGATCCTAATGAATTGAGACCCGGCCAAGTTAGACGGCCAACCATCCCAGGTGTTGGAGGAGGTAGGGGGCGAGGAATCAACTTGTTGAGGCGTGGACTCTCCGACATCAGCGGTGGACCAGGAGGACCCCCAGTGAAACAGAGGGATATTGAAGGGGCCCTCCTGAGGCTGGCCGGTgaccagagagggaggagagattcACGCCATGACAGCGACGCTGAAGATGATGACGATGTCAAAAAGCCAGTGTTGCAGTCATCAGTAGTAGCTACCTCCAAGGAGCGTACACGTCGAGACCTGATCCAGGATCAGACCATGGATGAGAGGGGAAAACAAAGGAATCGACGCATGTTTGGCCTGTTGATGGGAACATTACAGAAATTCAAGCAGGAATCTAATGTGGCAACGGATAGGCAAAAGAAACGCATTGAGATTGAACAAAAATTGGAAGTTCAAGCTGAACAAGAGCGCAAAAAAGTAGAGGGCGAAAGACGAGAGCTCTTTGAGGAGAGGCGTGCCAAGCAGACAGAGCTGAGACTGTTGGAACAGAAAGTGGAGCTTGCTCAGTTGCAAGAGGAGTGGAATGTGCACAACACAAAAATTGTCAAGTACATCCGCACAAAGACCAAGCCACCCATCTTCTTTCTGCCTGGGAGGATGTGCTCAGCCACTCAGAAGCTCTTAGATGAGTCTCAGAAAAAAATGAATGTTATGTTTGAGGAGAGACGCGAGGCATTTGCTGAACATCTGAATAAGATGGAGGCTCGGCCTCGGCGCCAGTCTCAGAGGGACACCGCTCTGGGTAAGGACCTGAAGAAAGAAGATCGAGAGGAGGGTAAGCCCATGGGTCAGGTAGTCAAAGTGACAGGTAACCGGTTTGatgtggagatggaggaggaagatgaggcaacaatagaggaggaagaggggggtgaGGGTGTAAAGCATAAGGAGGACAGAAATAAAAAGCCAGAGAAAGTCGAGGAGCAGGAGTCTAAGGGGGGGACTAAAGCAGATGAGATGGAGGAGGCTGAGGAAGACAGTCAAGACACTAGAATAGTGGAGTTTAGAGATGTGGGGGAGCAGATGGAGGGTACTGCACTAGTGAGGGAGGCTGAAGGGCAGGCCAGGGACGGGGATCAGAAGATGGAGGATAGTCCAGTGGAGGTAGGTAATGAGAAAGGAGTAGAAGAGCAGCAACCGGTTAAGGCAGAAAAGGAGCCCCTTCACGGTCGGGACCTCACAGCTTTGTCAGACGGCCAGGAGAAGAGCATTGAAATGCAACCAAACGAAGATGAAGAGCCACGTACAGAAGTGGCCACACCCCTGCTCTCAGAGTGCAACCCTCATGTGGAAGTCTCTGATGTAACATCTATGGCTCCTGAGGTTCAGATCCCCCTACTGGAGACTGAAACGGATCCAGAGCCGCTCACAACCGAGCAGAGCCAAGAGGCTGATCAAGGTGCCATAAAGCAGACCACTAATGCCCAGCCTGCCCAGGCCCAGGATGATGCTGCGGCTCCCAAGGAACTGGCGCCCCCGAGCAAGGAAGCCAGCAGGGGACTTAAGAAGTCAAAGGACAAGAAGGGAGGTGGTGGTGGCAGAAGCAGCAGTAGCTCATCTAGCAGCTCCTCCGGCTCCTCGTCCAGTGGGAGCTCTGGCTCCTCCTCTAGTGGCTCCTCCAGCAGGAGCAGCTCCTCCAGTGGCAGCTCCTCCAGCTCTTCTAGCAGGAGCCGCAGCCGAGGGAGGAAGGACAAGAAACGTAGGAGGAGGCCATccgagagggacagggagaggaagaaggcAGTAGTTGAGAGGAGCCACAAGTCATCCAAGGGCAGTGGTCGTGAATCCAAAGGTTCCAAAGATAAGAGCTCCAAGTCTGACAGGAAGAGGACCACCTCTGAAGGCAGCCGGTCAGGGAAGAGGTCCTCTCGCGGCGACAGGGATCGCAAGTCAGATAGGAAGGAAAAGAGGCGTTAAAGTTGAGTGCGTTCTGCTGTCATGTCATGCTTAGTTTTGTTTCTACTTTTGATAAATACATTTTCGTAACTGAAAGGTTGTGGATTTCCTTAAATGCAATTCACCAGAAGAGGGAAGCTAAACTGCCTCAGTGTATTTTCTTCGAATAATGTGGGTTTTTAATCATCAAGCTTTTTCTCTAGTCACCAGTCAGTTTTGACATGGTCTTGCTGCTCTGGTTTCTGGACTTATTTTACctcgatttttattttattagacTTTTCTATTGTCTGCTTTTACTGTAATTGATGCATCAAGTTTACAGTTTCTCTCCCATAAATGTATTTACTTGTTCTAAAGCATAGGAGCAATGAGAATAGGGTGGGTTGCATACCGGGTATATTCTCTGAATCCAGTGTTGGTGGTAATTGTGCATTTTCAGTTGTAAAATGTTGAACACTTGTAACCTACAGCTTTTTGATCCATATAAAGCCAGTCTGACCATGCACAATGTCTAGCTATGCATTGTTGAAGACACTTGTTTTGGAAAGTGATGttaatattttttttgtccaaATGAAACCTAAGcataatgaataaaaaaaaaacatgatta

Function

GO: NA

KEGG:

id description
K13114 PNN; pinin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1851382 lncRNA downstream 16144 35306332 ~ 35306598 (-) True G1617838
TU1851254 lncRNA downstream 153472 35136192 ~ 35169270 (-) True G1617714
TU1851252 lncRNA downstream 186850 35135255 ~ 35135892 (-) True G1617713
TU1850644 lncRNA downstream 492052 34830397 ~ 34830690 (-) True G1617140
TU1850553 lncRNA downstream 553968 34768481 ~ 34768774 (-) True G1617050
TU1851393 lncRNA upstream 325 35328272 ~ 35328503 (-) True G1617849
TU1851398 lncRNA upstream 5249 35333196 ~ 35333568 (-) True G1617852
TU1851400 lncRNA upstream 9770 35337717 ~ 35338320 (-) True G1617854
TU1851402 lncRNA upstream 12006 35339953 ~ 35340371 (-) True G1617856
TU1851366 lncRNA upstream 17695 35345642 ~ 35349271 (-) True G1617822
XM_021574034.2 mRNA downstream 403338 34864846 ~ 34919404 (-) True LOC110497721
XM_036954690.1 mRNA downstream 1241510 34076809 ~ 34081232 (-) True LOC110497713
XM_036954691.1 mRNA downstream 1241523 34076809 ~ 34081219 (-) False LOC110497713
XM_021574011.2 mRNA downstream 1241643 34076809 ~ 34081099 (-) False LOC110497713
XM_021574010.2 mRNA downstream 1242873 34076809 ~ 34079869 (-) False LOC110497713
XM_036954701.1 mRNA upstream 846 35328793 ~ 35331351 (-) False LOC110497723
XM_036954699.1 mRNA upstream 846 35328793 ~ 35331373 (-) False LOC110497723
XM_021574039.2 mRNA upstream 846 35328793 ~ 35331400 (-) False LOC110497723
XM_021574037.2 mRNA upstream 846 35328793 ~ 35331411 (-) False LOC110497723
XM_036954700.1 mRNA upstream 846 35328793 ~ 35331411 (-) False LOC110497723
TU1849241 other downstream 1843306 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 1909525 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2547038 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 2664973 32650926 ~ 32657769 (-) True G1615357
TU1848607 other downstream 2861163 32458530 ~ 32461579 (-) True G1615240
TU1851431 other upstream 64913 35392860 ~ 35396783 (-) True LOC110498336
TU1852753 other upstream 1073607 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 1326576 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3629077 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 4037310 39365257 ~ 39370266 (-) False si:dkey-229e3.2

Expression Profile