RNA id: XM_021574043.2


Basic Information

Item Value
RNA id XM_021574043.2
length 5100
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110497725
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35361013 ~ 35377653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCTGGATGTTTAGTTTTACGGAGAGGGAGTACCGGAACTGGACTGTTGTCGCACAATCTTACAACGGTTATATGTACACTTTCTGTCCGCGATTAATACAATAGTTTAGTGGTCTGCGCCATGGCTTTGTACGGGTGTGTCGGAGCCATGGCTTTACCTAGCGAGCTTATCGTCCATATATTTTCATTCTTGTCCGACCGTGACAAGCTTCGGGCCTCGTCCGTGTGCTCTCGCTGGAGGGAGTGTCTGTTTTACCCATCGCTTTGGACGGAGCTGAAGTTGCGTGTCGGAGGTGGTGCAAACTGGGGAGGTTCTGGCATCGAACAGACCCCAAGATTAGAATTTCTCATGAGGAAGTTTGGCGCCTTCGTGCGCGAGCTACATCTCGAGGTTGCCCCTGTGGACGGATATCTAAGCCCACTGAGCGGATTGGAGGGCAGGATAGAACCTGTAGAACGCGACCCTCAATTGCTTGATCGCTGGAAAGACGCAAGGATAACCTATTTGGAACAGGTGTTGTGTGTGCTCAGATGTATTCGAAACAACAGAAATCTCCAGAAACTGAGTCTGTATGGGGATACCTTCATTCTTCAGGATGAAGGCACTGTCCAGAATGCCCATCTCCAGCAGGTTGACCCAGGAGGCAAGAAAATCAAAGAGATCCAACAGCTGTTACTGGAGGTTCTGTCTAACAGCAGGAAGATAAAGTGGCTGTCCTCCACCTTCATGCTGGGTGTGGTGACCCCATGCTCCCTGGCCTCTCTGTCCAACCCCAGCGCAGGCTCCCTGGAGCACCTCGGCTTGCTGGACAACCAGCTGCCTTGCCTGGTCTCACCTGTGGAGCTGGAGCGGCTGGTCCACCTGCGTTCCCTGGCCCTCGACTTCTGTGACTTCACCTCAGACTTGAGCCACCTACTGGCTGGAGGAGACCGTGCTCCGCTACACCGCCTCTCCCTGATGCTCAACGGCGCTGCTCTGGAGGCTAAGCCGCTCGATGGCACCGCCAGTGAGGACGACTGGAAGGCCCTGGTCCAACGCAGCGCTAACCTGCGGGTTTACGTGATGGCACTGGATGTGTGCAGCCAGGACTTGCTGAGGGTGCTAAAACCAAGCCTGCCCCTGGAGAGGATCCACCTGGACAGCTACTCCACCTTGGTCACAGACGGAACCCTGGAGCTCATTGCCCAGCAGTACAACAAGACCCTGAGCCACTTCGTCCTGATGAGGGATGACACCGGCTTCCCTGACCTTGGCATCAACCGAAACGAGGACCCACTGGTCCTACTGGCCTGGCGCTGCGTACACCTCTCTGTATTGGTCATCCACGGCTACACTGTGTGGTCCCACAACCTGGTGGCCATCTCCCGTCTGCGTGGCTCCAGCCTCAAGGTCCTGGCTGTGTCCGAGGAGAGCATTGACTTCGACCCGGACCAGAGGGTCTTCATGCAGGGTGACCCCGTCCACAACCTGGTGAAGGAGGTGTCGCTGGGCCTGGGGCGCGTCTGGCACCCTTCTATGGACTCCAACCTGGTCCTCAGCGAGCCCACCCAGCACTTCCACAGGGAGATGCAGAGCTTCAGCTTGGGCATGTAGGCTAGTGCTGCAGCCGCTAGACCAGGCAGCCATCTgcgtcgtgttcattaggcatcaAACAAAAGAAAACCAGACCTAAACAGGAGGGACCCCACTTCACCAATAAGCAATGCAAATTTTCTGTTACAAAACGTTTTCCATTGAAtgacctaatgaacacaaccctggtctGGTCTTGCCTGCTGCACATGCTCAGTGTTTGTCTTGGGACCTATAAGGTGATTAGATcatctcatttacacattttattttcttctctGTAGCATCCTTTGTGCCGTGTTTATCAGTATTAGCTCTATATTTATATCTATCAATATATATCCTGCTTATGATTAGGAGAGTATAGTCGAATAATTGTTTAGTAGCTAAATGAGAGGTTGGTGTTGCAAGGGGGCTTTTCTACACAGCTAGCTTAGTTAGTTGTATTGCAAGTTTAATTTTTTGCTTTGTGTTTTGTCTGTCAGCAAGTGCTGAGTTATCAGTTAATCCACCTTTACTTTTTGCAATGATGGAATCCTGTGTACTTGTTCGTGCACATTTTTTTTAACGGGAGATTAGTCTAGTAGTCTTCCGGCAGAGGGAGGGACCATGCTGATGGAGTGTGTGGTTAGGCCCCCCCCTCAGCCCAGCAAGATCCTGTCTGCTCTTTTACTTTTGTGTTTTggagatgatattgttgctatgtTATGGGACTAAGATCCTGCTGGTTCTTCTCAACCCAGAGGTGGGATATGATAGGTTTCCACACTGACACTGAGTTTCCTACGTTCTGCTGCAGTACTTAAGTCAGGGGTTAGCGTTGCGAGTCGTACGCTGCAGTTTGCCCTCAGAAAAATCCTCTCTGTCTCAGGTGGGCAAAACATGATTCTAGGAAGATGATGAGGATGTATATACTATGAAAGAATCAGCTAGTCTCTCAGTCTAATGCAGTTTTCTTTTCTTCACATTTGCCTTGGAAAACCCCTTGTTTTCTAGTATCAGTCGTTTTTGCCATCCAATCTGCCCCTTTTTTACCATGGGGTAAACAAACTTAGTCGTACATTTGTTTTAAGATTAAGGTGTTTaaagaatggcaaaaagctaCTCCTTGCACATGTTTCTCTTGTTCACAGCTATGTTCGCTGACTCCAGGGCCACAGTGTTTCACCAGCTGAACGTTGGAAGGAGGGAAGCATTTGCTTGCTTGTTCCAAATCTCAGGATTTTTTCACTTTCAGTAAATTTGTCCATTTGAAGGCTTTCTTTTAATAAAAAGCTTTCTGTTGATCTGCGGGCCAGTGTGCGTGGTGGTGTGACTGGATACTAATACTGTGGAAAGAGCTCTTCCAACACTACGCGGTTTTATTTTTCTAGACGCGCCTTCTCGTGTCCTCTTAACTTTTTAAAAAGGTTAACATCCTCGATGTGCGTCTGTGAAAATACTTTTAATGGCGTTTTCTATAGTGTATTTGACATTTTAGAGCTCAGAGTAGTAGAGGGAATCTGAGGTTGATTGCTCAGTGGTAGAATGTAAATATGAAGCTAACAACCTTAATGTGTAAAGTTGTCTGCTATCCAGAATTCCACAAGCTTCGGGAGCCAGACTTGTCTGATAACGCAGTAGTGTGTGGGGCTTGGAATAGGTGACCTGTGGTTGTTCTATGCTGCTGAGATGTTGGAGCATTCCAGAAAAGAGGAGTGTAGGTTTCTCTTGAGCTTGTGTGGGGGTGTAAAGTTTCAGAAGTGCATACATCAAAGAATTAGCCGTATGGTGTGCTTGAAGCAAAGCATGGTGTACCCCTTTCTCACCAGTGAGCAGGAAACAGCCTTTCTCAGGGTTACTGTCAGTTGAGGAGAGGTGTTCCATGCCTAAAAAATAAATGATGAAAGTTAGGAAGAATCTTTTTTCCAACAAGTCACTGGATTAAACAAAACGGTCTGTCAGCGTGTCTGCATCAGCTGCCAAAGATAACTGTGTGAAACGACCCTTATGAAGTGCCCACGTGCTGGCATAGGGAAGGGCCAATGGCTGATCAGCCAAAATGTACTACTATGACTGCTCCTCCACAAATACTACTAGAAATATACCTACTGAATATGGGGTGAAGATGGACCACGTGGTGCACAGCTGTGCTGTGGCTTGATCAACAACAGAGCTCTCTCAGTTGTCAACAACAGAGCTCTCGCTCACCAGTTTCATTGTGAAAAGTGAATGTCATTTTAGTATAGATAAAATCAAGTTTGGTTGATTCTTTCAGCCCTGTATGCTGCTATCAGACGTGTAAGGAACATTCCACTGGGGAGTTAAAAACCAACAGAAAATGGCCAAATGTCTGAAAATGATTTTAAAATGGTTTTGCTGTGTGAAGTCTTATAGAAGTGGTTGTGTAGCCCAGTCTCACTCTGCATGTTAACAGGCATAGCAGTGGAGGTATTTTCTTTTATTTTTATACTCTGGAGAAACATACCATTTGGGTTATTACAGCTTACAAATCAGTTGGTTcccttttttttttcttgttttttatgcTATCACAATCCACATCTCTCTTGTTGAAAAGGAGGAACCTATATAGCAACAGTGAGCTGCTTGAGGGCAGGTCCATCTGAGAGTTAACTGTTACCTGTAGAACCTCATTGTGCTGCAGAAGCTACAGCTAAATGACCTCATACCAGCCTTATTAAGAGCATAAACGCTTGACGTCAAGAGACCTGAGTGAGGAGAATTCTGTTTTGTTTTATTCCATTATTAAAAACCTGCACCACTATCATACCACAAGTTCACTGTTGTGGGGGTCAGGAGGGAGGTGAGCTTAAACATGTCACATCTCTTAATGGCTGGCTTGCATTACAGCCAAGTCAAACACATATAATCCAGTGGCTTTTATTTTTCTGTCACTTACAAATGGAAATAACAATGTGATTGTTTTAAGATCTTGATTTTTTTGGAAGCCAAACTCCGTTTCAAAGGCTACCGTGGGTTACAGACATGGTCTCTATGAGACTGGCCAGCAGGCGCCAGTTTTAAGTGGTATGAATGTTGTGCATTTGTTTAAAATCAGGATATTTTATTGCAAAATAAGTCATGCATTACAAGTGGCCACCATGGGGCACTAGCAGTGCGAACACCTAGGCTGTGTCCTTATAAGCTTTCGGGGAAGAAAATAACTGCATATTTGTATATATCAATACATAATGTATACTCTTATGCAACATATGTCTGGGTTCTATTTATGAACATTTGTAAGCTTTAAGATGGTTTTACCATTTTTGCTAAATGTTGAAATATTTGGACAGGTGTGTTCTGTCAACTTTGTCTCAAGTGAGCGCATAGCGttggatatgtacagtacatctgCAAATGGGAACTCCACTGGTGCAGGTGTGAAAATGGCAAGTGTAGAGAATTTTGATTTGAAAAAGTGATGCAAGATAACTAAAGGAAAAAGCCTAAGTGACATAGTGTAAACCAGCTGAATGTTGAATGGTTCTTTTTAAACCAGTGAATAAAAGCATTAAACACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1851366 lncRNA downstream 11742 35345642 ~ 35349271 (-) True G1617822
TU1851402 lncRNA downstream 20642 35339953 ~ 35340371 (-) True G1617856
TU1851400 lncRNA downstream 22693 35337717 ~ 35338320 (-) True G1617854
TU1851398 lncRNA downstream 27445 35333196 ~ 35333568 (-) True G1617852
TU1851393 lncRNA downstream 32510 35328272 ~ 35328503 (-) True G1617849
TU1851427 lncRNA upstream 4924 35382577 ~ 35383134 (-) True G1617881
TU1851428 lncRNA upstream 5552 35383205 ~ 35383441 (-) True G1617882
TU1851429 lncRNA upstream 8452 35386105 ~ 35387259 (-) True G1617883
TU1851436 lncRNA upstream 9814 35387467 ~ 35388027 (-) True G1617888
TU1851435 lncRNA upstream 11066 35388719 ~ 35389427 (-) True G1617887
XM_036954697.1 mRNA downstream 24605 35328793 ~ 35336408 (-) False LOC110497723
XM_036954698.1 mRNA downstream 24605 35328793 ~ 35336408 (-) True LOC110497723
XM_021574037.2 mRNA downstream 29602 35328793 ~ 35331411 (-) False LOC110497723
XM_036954700.1 mRNA downstream 29602 35328793 ~ 35331411 (-) False LOC110497723
XM_021574039.2 mRNA downstream 29613 35328793 ~ 35331400 (-) False LOC110497723
LOC110498336 mRNA upstream 14759 35392412 ~ 35395320 (-) False LOC110498336
XM_021574049.2 mRNA upstream 61473 35439126 ~ 35441887 (-) True LOC110497729
XM_036954710.1 mRNA upstream 82559 35460212 ~ 35538760 (-) False ralgapa1
XM_036954709.1 mRNA upstream 82559 35460212 ~ 35538761 (-) False ralgapa1
XM_036954711.1 mRNA upstream 82559 35460212 ~ 35538761 (-) False ralgapa1
TU1849241 other downstream 1881577 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 1947796 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2585309 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 2703244 32650926 ~ 32657769 (-) True G1615357
TU1848607 other downstream 2899434 32458530 ~ 32461579 (-) True G1615240
TU1851431 other upstream 15207 35392860 ~ 35396783 (-) True LOC110498336
TU1852753 other upstream 1023901 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 1276870 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3579371 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3987604 39365257 ~ 39370266 (-) False si:dkey-229e3.2

Expression Profile