RNA id: XM_021574067.2


Basic Information

Item Value
RNA id XM_021574067.2
length 3628
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110497741
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36225227 ~ 36237234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGGGTTGTAATGTACTGGGAAGGGGGAAGGAAATTACTCTGAATGATGATATAGTTCAAGAAGATATGCTGACAAAATAAGGCACTAGCGAAACCAGCATTCTTATAATGAAAGTAGGGTTTCTCAGAATCTGTTGGTCTGTGGCACTGAGCCCTATAAAGCCCGTAACCACCGTGCCCTCCCGTCTCTAACGCCAGATGTGAGCAGTGCCTCTTTCGCGCTACAGCTGCCTTACTTTCGGATTGGTCAGTAACCAAGCGCTTGGTTCTTCAAAGCACTCAGAGAGTTACTGCCGAGAAACCTAGCGACTCTCACCATCAAAGACCGCGAACAGCCTATTTCAAGGGGCGTGGATAAGAGCTGAGTGAGTGGAATGGCCAGGACTGTCGTTGTTTTGAGTCAAACTCACTGTGCTGGGCCCCACAGCCTGGTACTGTGTGGGTGCTAACAGAGAGGAACAAAGCATGTGGACCACGTCTGCTATGACAGTCAACATGTCTGAGGCTGAGCCAGATCACATTAACTGCACCATCAGCCATGAGATCCACCAGTACCTGTTCTCTGTGGCCTACATCCTGGTTCTTTTGATTGGCGTTCCCACCAACGCCTACTCCCTCTACCATGCCTGGCTTCAGCTGAGAGACAAGAACGAGCTGGGGATCTACCTGCTCAACCTGACCGTGTCAGACCTCCTCTACCtggcctctctgcctctctggctGCAGTACATCTTCCAGGGAGATGACTGGAGACAAACTGAGTGGCTTTGCCAGCTGTGTGGCTTCCTGCTCTATGAAAACATTTATGTTAGTATCGGATTCTTATGTTGTATCTCTATAGACCGTTACCTGGCCGTAGTGTACCCATTCCGCTTCACAGCTTTTCGAAGTATGCGGGCAGCCACGTTGGCCAGCGCCTTCATCTGGCTGAAAGAGATTGCTGTGGGTGTTGTCTTTTTCAGACACAAGGAGCTAAGCAGGGACAGCACCAACCAATCAGTGTGCTTTGAGCACTACCCCATGCAGCCGTGGGAGTACCCAATAAACTACTACCGTTTCGCCGTTGGCTTCCTGTTCCCACTAGGCATCCTGTCCGTGTCGTATCTCCGCGTCCTGCGGGCGGTCGGAAAAAGTGTAGGCACGCAAAGCACCCAGAAAACGCGCATCAAGAACCTGGTGACCAGCACCATTGTCATTTTCCTGGTGTGTTTCTCTCCATACCACGTGTTCCTGCTGGTGCGTACCATCTTAGAAAGAGACTGCCCCTTCATAATCAACATCTTCAACTACTACCACGTCTCCCTGCTGCTCACCAGCTTCAACTGCGTGGCCGACCCAGCGCTGTACTGTTTCGTCAGTGAGAGGGCCCAGCAGGGGATCCAACAAGCTCAGGAGGCCTGTAGGCAGgccctctgctgctgctgccacaGGGGACAGCACAGCCCCGTCACAACCACAGGTACAGACTCCGAGGTGGCCACCTCCAACGAGAACAGAAAAGTCTCAGTCACACTGCTGACGTCTAGTAGTAATATTAATAATACATGGGTTTTATGAAGCTCTTTTGAAGGACCTAAAGACACTTGAATAGTAGACTAGGAGCTAGGGTTGGATTTGGATGAGAGAGAAGGTCGGGGAAAAAATACATACAGTGACAGGACATTGGACATGAGACATTGGACAATGATATGATTATGGGCAGTCCTATGAGCAGTAACATGTGAAGGTCATAGGAGCCCATCAAATTCGCTGttaaatgaaagctaagagtctatatttttGAGAAATTAACGCATATATACACTTTTCAACCATTTCCAATGCAAAGCATGtggaataagcaaaggctttgatttctgttCAACCAGATAGAAAAGGGGTCTTAGAtaacatctaccagaaaaagtcttaaaggtatcagaaatacatgAAAACCCAGtaatgttgaagtaaagacccTTCCAAgtaatatctatatatttatatttagttttgcagaaatgttttgacaTCTGTAAGTTTAAGGAGTATTGCCTAGTGTCTCGTCATTCTCTTACCAGAaacatatctttaagatattttctcatttctctccctcatgaggagggaggataatgaaagttcacataaGTAACAATTAAAGGTAGACCTACCGATTTGAGTGTTTTTACTGATAACAATTTGGTTTATGATTTATTAAGTGATTTAAAACGTGTCATTTTGTTACCAAATTGGTAACGGAATGACTTCTCCAGTTGAAGTCACTTCTCCTGGTTCTTATTGCCACCTAGCCATGACTCTCATGAGCCCTCTCtatttccatttactgtaaccagccctctcacccactgagcaccgacGGAGACCGCGCGTCCTTGGACGTGGAAAAGTAGTTTACATTTTGTCAGTCCAAATCTaaaccaatcatagatgtctgtttctactgtactgtactgaccttTACTATGCTGAACTATACTGCGCTGTACTGACATTTACTTttctgaactatactgtactgtactgaccttttactgtactctgctctactgtgctgtatttTGGTGCTGTACTTTGTTGTCCAAACGTGTGAAACAATgacgtctatgattggtacaGATTTGGTCCGAACCGgaccaaccaaatttggtcttgtttggggccggagctcattagaataatagccaTTGTGTAGAATAATGCATTACATTTGTTCTACCTTTTGTGTACCTTTTTTAGGATACATCACAATGAGGAGAAGGACATTCATAATGATGCACttctgtatagtacagatcaTGGTCTCATGATGTGACCATCTGTTTCCGGGTgttaatccacttcacttactgtatgtagttcaataaccaaagtAGATTTTTCTTTTCAAACTCAAGTTGTCATATCACTGCTGACACCGATTCTTTCTGCaaacatctttgaatcttaatttggAGTAAAACGTGGTCCAAAAAAACTGAGGGAGATTATATTggcattctgttaccaaactttacatctgcactgttcttcgagtcaatgtttttgtaaaatattcagtggaaattgttaaaagtggTCCTTGTGCATAGAGCTGTATGCTTTGTTGAACTTtgcaatcaatggtttttgtcTGGCATACAGTCTGTGTCATTCTGTTACAGTGGCCTTGGACATATGACATAGTAAAAGTGTTATAATTAAGGTAATAACATGTGAATATGAtgctttttgttttttaaatgaatgtTTTATACTTTCTTTAACATGTGCAGGACACTTGCACAGGTGATGCTGCCTTGTGTATAAGCCTGAGTTGAAAACTATCTTCAATACCAAGTTCTTTCTGCAACATTGTCAGGTTTTAATCTTTCATCACATTATGTAATATTCATTGTGTGTTTATGGTTTTGAGAGTGACTCTGAATTCATATGTCATATCAGCACAGATTCGACATATCAGCACAGATACGACATATCAACATAGCCTCTTGACCAAACTTATCTCTATTTCCTGTTTGTTTCTTTttaagtacactgaacaaaaatatataaagtgttggtttcatgagctgaaataaaatatcccagaaatgtttcatacacacaatagcttatttctcttaa

Function

GO: NA

KEGG:

id description
K08408 GPR68, OGR1; ovarian cancer G-protein coupled receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1852625 lncRNA downstream 92196 36132802 ~ 36133031 (-) True G1619002
TU1852623 lncRNA downstream 94545 36130460 ~ 36130682 (-) True G1619000
TU1852622 lncRNA downstream 95332 36129226 ~ 36129895 (-) True G1618999
TU1852619 lncRNA downstream 98116 36126805 ~ 36127111 (-) True G1618996
TU1852607 lncRNA downstream 102059 36122916 ~ 36123168 (-) True G1618985
TU1852747 lncRNA upstream 110340 36347574 ~ 36350149 (-) False G1619115
TU1852748 lncRNA upstream 112150 36349384 ~ 36350149 (-) True G1619115
TU1852754 lncRNA upstream 131564 36368798 ~ 36368917 (-) True il17a/f1
TU1852781 lncRNA upstream 192037 36429271 ~ 36429510 (-) True G1619147
TU1852789 lncRNA upstream 201869 36439103 ~ 36439305 (-) True G1619155
XM_021574064.2 mRNA downstream 289838 35895612 ~ 35935389 (-) True zgc:174356
XM_021574056.2 mRNA downstream 521509 35689469 ~ 35703718 (-) True LOC110497733
XM_021574062.2 mRNA downstream 563382 35647704 ~ 35661845 (-) True LOC110497737
XM_036954707.1 mRNA downstream 686465 35463752 ~ 35538762 (-) False ralgapa1
XM_021574068.2 mRNA upstream 3546 36240780 ~ 36323039 (-) True ccdc88c
XM_021574075.2 mRNA upstream 131552 36368786 ~ 36370367 (-) False il17a/f1
XM_021574078.2 mRNA upstream 178492 36415726 ~ 36419930 (-) True LOC110497747
XR_002469848.2 mRNA upstream 353699 36590933 ~ 36593040 (-) False LOC110498571
XM_021574081.2 mRNA upstream 404353 36641587 ~ 36673956 (-) False LOC110497749
TU1851431 other downstream 828444 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 2745791 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 2812010 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 3449523 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 3567458 32650926 ~ 32657769 (-) True G1615357
TU1852753 other upstream 164320 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 417289 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 2719790 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3128023 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 3158834 39396068 ~ 39411784 (-) False G1623037

Expression Profile