RNA id: XM_021574081.2


Basic Information

Item Value
RNA id XM_021574081.2
length 3378
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110497749
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36641587 ~ 36674532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGGTGCGACAGGCAGTACACATACATAAACCTCATTACTATCAACCGCTGGGGTGCACCCACCCATGTCAAGCTGAGAAGGATAGGCAACATCTATGGCTTCAGACCCTGTCATTGCTCCAGACACATTTTCGCCTTACTTTTCGGGTATATTTTATCATGCCATTCGAAGCAACAATAATACATATTTGTGACAAGGGCGCTGgcacatttgttttatttttctaCATTTTCTCAAGCGCTATTGAGCAGATCTATGGTCTTTGTGTTTATTGAGAAGAACAATAGCTATGAAATTTCCACTGGAAAACCCTAGAAAACAAGTCAATTTGGACCCGGAACAACAAGTGGCAGTCCAAACCAACTTGGTCCCTCCCAAGAAGGTCCAGTCAGGGATGGTCCAATCCAGCCCTGTCCAGGCCAGTGGGGCAGCCATGCAGAACCCGATGGGCTGTGATCCCAAGGGGGCCAACGGCCACTGCCCCTTACCCCGGctctccgtctcctcccgttCCGCCAGCGTGGTGGCCAGCATGGACACCACCGGTGACCTCTTGGCCCTCCACTCTGTGATGAAGTGGAAGACGGTGGTGGCggtgtttgtggtggtggtggcctaCTTGGTGGGTGGCGGCTTGGCCTTCCGGGCCCTGGAGCAGCCTTTCGAGAGCAACCAGAAGGACAGCATCACCCTGGAGAAAGCTTTGTTCCTGCAGAGGCACCGCTGTGTAATGCCTGCTGAACTGGAGGCACTCATCaagCATTCCATCGACGCTGTCAGTGCAGGAGTCAGTCCGATCGGAGACACGTCTTACAACTCCAGTCACTGGGATCTGGGCAGTGCTTTCTTCTTTGCTGGAACCGTGATCACAACGATAGGTTACGGGAACATAGCACCCAGCACGGAGGGAGGGAAGATCTTCTGCATCCTGTACGCCATATTTGGCATCCCGCTGTTTGGGTTCCTCCTGGCTGGCATCGGAGACCAGCTAGGAACCATATTTGTCAAGAGCGTCTTGAGGGTGGAGAAGATATACAGGCAAAAACACAAACAGATCAGCCAGACCAAAATCAGAGTCACCTCCACCATACTCTTCATCATAGCTGGGTGCATAGTCTTCGTTGGCATCCCGGCAGTCATTTTCAAACACATCGAGGGATGGACGACTCTGGATGCTATCTACTTTGTCATCATCACGCTATCAACCATTGGCATAGGGGACTATGTGGCAGGTGGGGATCGGAAGATCGAGTACATGAAGTGGTACAAGCCTCTGGTCTGGTTCTGGATCCTGGTGGGCCTGGCCTACTTCGCTGCTGTCCTGAGCATGATTGGAGACTGGCTCAGAGTGCTGTCCAAAAAGACCAAAGAGGAGGTGGGGGAGTTCAAGGTCCATGCGGCTGAGTGGAAGGCCAACGTGCGGGCCGAGTTCCGAGAGACGCGGAGGCGGCTGAGTGTGGAGATCCACGACAAGTTGCAGCGGGCCGCCACCATCCGCAGCATGGAGCGCAGGCAGCTGGGCCTGGAGCAGAGGGCCCACTCCCTGGACATGCTCTCCCTAGAGAGGAGGGCTGTGTTTGCCAGCCTGGACCAGGGCCGCTTCAAAACCTCCTCCCAGGAGAGCATTGACACCAAGCTGAATAACTTGAGGGCGAAAGGGGCAGGGGATCTTTGTTATGACCAGCGGAGAGGCAGTGAGCAGACACAGCAGGCCTCGTCAGAGGATAATCTCTTCAACCTCCGCTTCCGCTCCCTCACCAAGCTGGCCAAGAGACACAAGAACCGCGACCTGAAGAGGAACATTCCTGAGGACGTGCGGAGGGCCTGTGAGgcgatggagaggaggaaggaggaggagggagcggagaaggaggaagaggtggaagagatggaggtggaggaggaagggggagagaggaaagagggcaATACCAGCTCAACAAATTTAGAGTATGCAGACGAATGCTgaggacaaagaaagagagaacgataGAATATTGAAAGAAAGAGAGCTTGAGCCCCAGAAAAGTCCCTATTTTGATGTCTCAAATTGTGCCTGGTTGTTTTTTCTTTTCAGAGCACCCTACTTCCTATccaaccccaccccacccccaaccGACAAAAAAGCAGACGCAATGTGGGATAGCTTCTCTTTTTTACCCAAGGCTTATGTGAGCAAGTAACCCAGTGAACTAGTGCAGAGCTTCCTAAACCCGGTCCTGGACCGAATCTACTTTTACTGATGAGGTTTTGATGGCCATTGGACCCAGTTCATTCTGCACATCATAGGAACGATTTGTTAGTgtgacattttgttactttattcTGTCATTTAAGATTGATTATGAATTTCATGTATTTTATTAATTGTATTTTACACAGCATGTCTGTGTACAGTATCTATGTAATATCAATTTCTGCAATTCTTTTTTTTCACAGTAAAAGAGAATACAATTATATTTGTCCACCATACGCTACATATATGTGTTAGTGTTTTTCTCTCACACAATCCGATCAAGTATTGCATTTACCTATACTGAGGCAGGAACTTAACCATATGGGTTGTAGCCACTTTACAGTTGACTAATGTTTTTGGTCCTTTGCTATGTTTTTGTCATTGATGTGCTTCCTAAAGCTTTACCTACTGGGCAAAAACTAGTTGAATTAATGatgtttccatgtaatttcaaccCAAGAAATCTACGTGATGTCATTGAATGAACGagaaaaactgattggatttgcaaaagtCATCAACGAAAGGGAATGACATATTTTTTCACtcaactttgaacctaaatccaatgaaatggtgacacttgttgttgatttcgAAACTaaacgttgaactgacgtctgtgcccagtgggtactcAGTAATCAAAAACACTAATTATGTGAATAGTGGTAACAACCTTTACTCTATCAAATACAATTACATAATGGATTTTGGTGTGAATGAGCTAGCCTCTCCATTATTTAATAAGGGAACACATGATTATTGTATTTTTGGTAGTCTAGTTATGTTCCTCTACGGTGGAACATTGAATTCTGTATTTGGTCCCTCTGGTCTTCTGCATAGTCAAAGAAGGAACAGATGCTGTCGGGACTTAGGCTCACTCATCATATCAACAACAATACATATTAGATAGACTGAAAAGCTTGTAGTCCTGATAATGAATAATGTAAGTACTGGTTATAACCTCTATTTCTTGAATTCTATCATAAAAATGGCTTACCATGATAATGACCTTTCTAAGAACCAGAATGGATTTTCCTTGCTCAGTCTTTTTTGTGCAAACATTATATCAAATGAAGTGAGTGGCTTtctgggaataaatatcactaaGGAAAATTAAGCTGATGTTGTGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1853210 lncRNA downstream 48831 36590977 ~ 36592756 (-) True LOC110498571
TU1853164 lncRNA downstream 111416 36529893 ~ 36530171 (-) True G1619518
TU1853162 lncRNA downstream 114906 36526355 ~ 36526681 (-) True G1619516
TU1853158 lncRNA downstream 120240 36521093 ~ 36521347 (-) True G1619512
TU1852789 lncRNA downstream 202282 36439103 ~ 36439305 (-) True G1619155
TU1853298 lncRNA upstream 4768 36678724 ~ 36684107 (-) True G1619632
TU1853277 lncRNA upstream 74976 36748932 ~ 36749434 (-) True fam98b
TU1853580 lncRNA upstream 333586 37007542 ~ 37008012 (-) True G1619895
TU1853590 lncRNA upstream 342660 37016616 ~ 37016834 (-) True G1619905
TU1853601 lncRNA upstream 347472 37021428 ~ 37021726 (-) True G1619916
XR_002469848.2 mRNA downstream 48547 36590933 ~ 36593040 (-) False LOC110498571
XM_021574078.2 mRNA downstream 221657 36415726 ~ 36419930 (-) True LOC110497747
XM_021574075.2 mRNA downstream 271220 36368786 ~ 36370367 (-) False il17a/f1
XM_021574068.2 mRNA downstream 318548 36240780 ~ 36323039 (-) True ccdc88c
XM_021574067.2 mRNA downstream 404353 36225227 ~ 36237234 (-) True LOC110497741
XM_021574090.2 mRNA upstream 45965 36719921 ~ 36739621 (-) False LOC110497751
XM_021574085.2 mRNA upstream 45965 36719921 ~ 36739629 (-) False LOC110497751
XM_021574087.2 mRNA upstream 45965 36719921 ~ 36739629 (-) True LOC110497751
XM_021574091.2 mRNA upstream 74897 36748853 ~ 36757484 (-) False fam98b
XM_021574093.2 mRNA upstream 90749 36764705 ~ 36840800 (-) False LOC110497753
TU1852753 other downstream 236251 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 1244804 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 3162151 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 3228370 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 3865883 32771917 ~ 32775704 (-) True LOC110497688
TU1856858 other upstream 2283068 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 2691301 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 2722112 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 2728100 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 2730836 39404792 ~ 39411784 (-) False G1623037

Expression Profile