RNA id: XM_021574085.2


Basic Information

Item Value
RNA id XM_021574085.2
length 2960
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110497751
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36719921 ~ 36739629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAAAGTATAAACACTAAACAGAACAGGCTGTTGTGGTGGGCATGGAAACAATGGAAGTCTACAAAGCACTCTGTTTGATGAATCTACTAGTTGCATTCCTTTCAAAAGGGTCTCACTCTCAGTTGGATGTATGCGGAACCCCTCTCAACACTAGGATTGTGGGGGGTCAGGATGCTCTTGCAGGGAGTTGGCCATGGCAGGCCAGTCTGCACAGATCTGGCAGGCATTTTTGTGGGGGATCCCTCATCAACAAAGAGTGGGTGCTGACTGCTGCTCACTGCTTCTCCAGCCCCAGTACATCAAATTTGGTGGTCTACGTTGGTCGTCAGAACCAGAAGGGCTCTAACCCCAACGAGGTGAACCGCGGGGTCACTCAGATCATGTCCCACCCCAACTACACCAGAAGTACTAATGACAACGACATGTGTCTTCTCAAGCTCTCCTCCCCTGTGACTTTTACCAACTACATCCGGCCAGTCTGCCTAGCTGCACCAGGCAGCTCCTTTCATGCCGGCACTACTAGCTGGGTCACTGGCTGGGGCACCATCCGCAGTGGAGTGTCCCTGCCCTCACCAAAGACCCTACAGGAGGTGGATGTGCCAGTAGTGGGAAACAGGCAGTGTAACTTTAACTATGGAGTAGGTTCAATCACAGACAACATGATCTGTGCTGGTCTAGCAGCAGGAGGAAAGGATTCCTGTCAGGGGGACTCCGGAGGTCCGATGGTAACCAATCAGGGTACTCGCTGGATCCAGTCTGGTGTTGTGAGTTTCGGCAAAGGCTGTGCCCTGGCAAAATTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCAGTGACCAGCCTGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGACCTCAGTGTCTTCTGTACTGGTCTTTCAGCCCCtacaaccaccactaccactacaaccaccactacAACTGCCCCTACAACTGCCCCTACAACCGCCCCTACCACTGCCCCTACAACCGCCACTCCAACTGCCCCTACCACTGCCCCTACTGCCCCtacaaccaccactaccaccacaactgCCCCTACAACCgcatctgTGGTGTGTGGCAGCGCTAGCTCCTCTTTGAACTCCCATGTTGGTGGCGGAAGCTCGTTGGCGACAGCAGGTTTGTGGCCCTGGATAGCCAGCATACAGACTAACGGAGCGCACGTCTGTGGGGGCACTTTAGTGGCGGTAGACTCTGTCATGAGTGATGCCAGCTGCTTTTCTAGCCAGGCCAACGCCTCTGAGTGGACCGTGATTCTGGGTCGTCTGAAGCAGAGCGGCTCCAATCCCCACGAGGTAACCCAGAACGTCATCAACATCACCATGAGCAATGTGACAGGCAAAAACGTGGCCATCCTCCGACTGGCCAGCCAACCCACATTGTCTGACTACATCCAGCCTATCTGTGTGGACAAGGGAACCAGAACCTTCAGCACAGGGACTCCGTGTTGGGTAGCTGGCTGGGCAACAGGTCAGGGTGGCGCTGAGGAAGTTCTGCAGGAGTTCCAGACCTCTGTGGTGGAATGTGTGAATGTTTCGTCTACGGACAACATTTGCACCGGAGCTGTGACACTACTGCAGGGTAATGCCGGTGGTCCTTTGATGTGTAAGCATGGCAACTCATGGTTCCAGACTGCTGTGTTGACTGTCGACAGCAACACCACTAGCAATAACAGCACCAACAAAGCACGTTGGAGCAGGGATCCCCACACCTCCCCTATCCAAGTCTTCACCAAAACCTCCCACTTCCAAAACTTCCTGGCTGCCAATTTGGGAACCTTCCTATCCCCTGCCACTTCAGCTGGTGGCAGCAGTGGAGCTTCCCTggcccactcctctctcctcctcttctccctctcctctgtcttacTGTTGGGTTGGTACTAGGAAACTCCACAGCTACCATTGACAAGCCCTCTCTAACTTCCAACCAAAAGTATATTTTTTTCGAGGAATTAATCAATTTTTGTCAGTGACTGGTAGTGTGTCAAAGCCAGGATTCTAGTTTTGAACTCAGGGAGCCTTCATTTCCAGTCATTTGAATGATGAATGTTTCCAACTTCCTTTGTCTTTTTACTATTTTTGCTGTCAATGTTTTTGTATCAGTAGCATTTTCTGGATACTATTTTGTTATGACACTTACAGCATTGCTGTTTGAGACGCAATATGCAGGATTTTCTGTTAACTGTCTGGGTGTGTAACATGACAATATCCAGATACCATGTAAAACAATGGAACATAATAATGTTGCCAGAGTTGACCCTTTCTAGCCTGAGCGAAATGTTCCATTTCTTGCAGGATCAAGACCTCTGCATATATTAATGGGTATACTTTGCTGGTGTAAAACCATGATAGGCATTTTGAAAGCGGAGAAACAGCCCCTTGACTGATTGCTATTGTATGTCACATTTCAAGAAATAAACTGAAAATATGCTTCTTATACAAAAATCGATGCTTTCTCCCAAACAACTGCCATTCCCACAACTTTTTAATGAAGATGAGGAAAGAGAGCATATTGTCTTTGTTTGATAAGTGTTGAACATTTGAAATCAGAATAGAAATACCTTTTACTGATGTTATTTTTCAAAAATTCTATGGAATATTCTTTGATCAGACACTATCtggttagtaaataaataaacatctgcaTCAAAACAAATGACAACTAGCATTTAGTCTTACATAAGGAAATAAGTCATATAATATTAAAACAATTATTCTTTCAATGAAGTTATGGGGAATAGATTGTCTGTCATAGCCATAACATTAATCTCAGTGATTTTTACCATAAAAATTGATCTGGAATTACAGTGCCTATAGAAAGACTACGCTCCCttaactttttcaaaatgttgttgtgagaaaataagtatatattaaaaatacaaaactgaaatatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1853298 lncRNA downstream 35814 36678724 ~ 36684107 (-) True G1619632
TU1853210 lncRNA downstream 127165 36590977 ~ 36592756 (-) True LOC110498571
TU1853164 lncRNA downstream 189750 36529893 ~ 36530171 (-) True G1619518
TU1853162 lncRNA downstream 193240 36526355 ~ 36526681 (-) True G1619516
TU1853158 lncRNA downstream 198574 36521093 ~ 36521347 (-) True G1619512
TU1853277 lncRNA upstream 9303 36748932 ~ 36749434 (-) True fam98b
TU1853580 lncRNA upstream 267913 37007542 ~ 37008012 (-) True G1619895
TU1853590 lncRNA upstream 276987 37016616 ~ 37016834 (-) True G1619905
TU1853601 lncRNA upstream 281799 37021428 ~ 37021726 (-) True G1619916
TU1853694 lncRNA upstream 283969 37023598 ~ 37023806 (-) True G1619996
XM_021574082.2 mRNA downstream 45389 36641587 ~ 36674532 (-) True LOC110497749
XM_021574081.2 mRNA downstream 45965 36641587 ~ 36673956 (-) False LOC110497749
XR_002469848.2 mRNA downstream 126881 36590933 ~ 36593040 (-) False LOC110498571
XM_021574078.2 mRNA downstream 299991 36415726 ~ 36419930 (-) True LOC110497747
XM_021574075.2 mRNA downstream 349554 36368786 ~ 36370367 (-) False il17a/f1
XM_021574091.2 mRNA upstream 9224 36748853 ~ 36757484 (-) False fam98b
XM_021574093.2 mRNA upstream 25076 36764705 ~ 36840800 (-) False LOC110497753
XR_005037707.1 mRNA upstream 289625 37029254 ~ 37036523 (-) True LOC118941471
XM_036954729.1 mRNA upstream 427141 37166770 ~ 37243329 (-) False cdin1
XM_036954732.1 mRNA upstream 427141 37166770 ~ 37243329 (-) False cdin1
TU1852753 other downstream 314585 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 1323138 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 3240485 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 3306704 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 3944217 32771917 ~ 32775704 (-) True LOC110497688
TU1856858 other upstream 2217395 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 2625628 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 2656439 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 2662427 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 2665163 39404792 ~ 39411784 (-) False G1623037

Expression Profile