RNA id: TU1853277


Basic Information

Item Value
RNA id TU1853277
length 478
lncRNA type sense_over
GC content 0.38
exon number 2
gene id fam98b
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 36748853 ~ 36757484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGGTTGGGGTCACGGAGGAAAGAGGGGACGTTATCAATACTAACAATGATTTATTTTTGACTGAAAAGCCAAACAGTGTTAACTGAAACCTACTCATGTGTACCTGCTTCGCTAAGGGCAACACTAAGGCATTGTTTATTTGGAGTGATGTGGACTTGACTGAGATTTACAGAATGCTACTGTAGGAACACTCCCAAATATTTGTCACCCATTTTTGTGTTCATTTTCAATGCTGTTATGAACTGTGCTGCTGAGGATCGTTGTAGAAGCAACGAGTCAAACTCACTGGccatttttttttatagatttattttattattttggtaacactttacgacacggtcataaccTGTTATAATACTGTGATGATGCATATATTTACACCGGTTGTGACATTGCGCTATTTTAttgctggttatgacacctacataagtgtcaaaacccacatttattcaaattaGATTTTCCCTGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1853298 lncRNA downstream 64825 36678724 ~ 36684107 (-) True G1619632
TU1853210 lncRNA downstream 156176 36590977 ~ 36592756 (-) True LOC110498571
TU1853164 lncRNA downstream 218761 36529893 ~ 36530171 (-) True G1619518
TU1853162 lncRNA downstream 222251 36526355 ~ 36526681 (-) True G1619516
TU1853158 lncRNA downstream 227585 36521093 ~ 36521347 (-) True G1619512
TU1853580 lncRNA upstream 258108 37007542 ~ 37008012 (-) True G1619895
TU1853590 lncRNA upstream 267182 37016616 ~ 37016834 (-) True G1619905
TU1853601 lncRNA upstream 271994 37021428 ~ 37021726 (-) True G1619916
TU1853694 lncRNA upstream 274164 37023598 ~ 37023806 (-) True G1619996
TU1853774 lncRNA upstream 340623 37090057 ~ 37091448 (-) True G1620034
XM_021574085.2 mRNA downstream 9303 36719921 ~ 36739629 (-) False LOC110497751
XM_021574087.2 mRNA downstream 9303 36719921 ~ 36739629 (-) True LOC110497751
XM_021574090.2 mRNA downstream 9311 36719921 ~ 36739621 (-) False LOC110497751
XM_021574082.2 mRNA downstream 74400 36641587 ~ 36674532 (-) True LOC110497749
XM_021574081.2 mRNA downstream 74976 36641587 ~ 36673956 (-) False LOC110497749
XM_021574093.2 mRNA upstream 15271 36764705 ~ 36840800 (-) False LOC110497753
XR_005037707.1 mRNA upstream 279820 37029254 ~ 37036523 (-) True LOC118941471
XM_036954729.1 mRNA upstream 417336 37166770 ~ 37243329 (-) False cdin1
XM_036954732.1 mRNA upstream 417336 37166770 ~ 37243329 (-) False cdin1
XM_036954733.1 mRNA upstream 417336 37166770 ~ 37243329 (-) False cdin1
TU1852753 other downstream 343596 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 1352149 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 3269496 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 3335715 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 3973228 32771917 ~ 32775704 (-) True LOC110497688
TU1856858 other upstream 2207590 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 2615823 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 2646634 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 2652622 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 2655358 39404792 ~ 39411784 (-) False G1623037

Expression Profile