RNA id: XM_036954732.1


Basic Information

Item Value
RNA id XM_036954732.1
length 2422
RNA type mRNA
GC content 0.47
exon number 13
gene id cdin1
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 37166770 ~ 37243458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTGTATTGTGCTCCTTGCATTTATTATAATAACATTGTTTTACTGGAAAATAGCATTGATTTTGCCTGTATTATATTGACTTAGCATTGCATGCATTAGCTATTATTAAACTAGCGGACTATTTACTGTCGTTTATGTGACCGATTTGAAAGAGTTTGATACGCTGAACATTGCCACGCAGATTATTAAAAATGAAGCTGTCTCGAGCTGAATACAAGGAGATAGTGAAATGCACCGAACATTTGAGACCCACGCGTCAATGTATGACGATACTGAGGCAAAGATTTCCAAATCACTCGCAGTCCACTCTTCTGAGCATCTTCTCCCTGGAGTACCagAAAAGGACCAAAAGAACCATGTCAAGGCATCAAGCCCCGGATAGCATTGAAAGCTACTACCAAAGGTACCTGAGCGAAGCCAAGGCACGTCCCTCGTTCCCTGTCCTCTTGGAGCTGGCCAATGAGGTGGACCTCTCCCCTGCGCTCATGGCTCGCATCATTGTGGACAGGTTCCTTCAGGATCAGGagggcagtgtgtATATGACCAAGATTGGTGCTGGAGCAAGACTCGCACATTCATACATCCGTTTTGTTTTGAATAATGAGAGCCAGGGCACTTCATTAGCAAGGAGGGAGGAAGCAAGAAAAAGAGTCGGAGGAGGGGGTTGTGGGCAAGCCTCCAAGCAAGTCCTCAACAACATGCTACGGGAGCCGTCTTTGATTCCAGACCAGGCTTTAGCCAATCACGTCTACCAGTGCACAATAAATGACTGCTGTTATGGACCACTGGTAGACTGCATCAAACATGCTATTGGCCAGGAGGCCGAGGTGCTCCTACGTGACAAACTGAAGGAGAGAAACCTGTCCTTCTTAGATGAAAACCAACTGCGAACCAAAGGTTATGACAAGACGCCTGACATTATTCTGGAGGTGCCAATCGCTGTGGAAGGCCATATTGTCCACTGGATTGAGAGCAAGGCCTCGTTTGGGGACGACCACAGCCATCGCACCTACCTGAACGAGCAGTTCTGGAGCTACTGGAACAGGTTTGGTCCAGGACTGGTCATCTACTGGCATGGTTTCATTGGTGAGCTggacagccagagagacagaggcatacTGCTCAAAGACTGCTTCCCGTCTGACATTGTGACCCTCTGCCACGGGACCAGCCCAGCCacgactgactcactgactggctGACACTGGCCTGAgcaaggggagggagaggagagggcagggggagTGGTAGGGTTAAGGAAGGGTATCGCAGAGGTGGATACGTGGATACGGAAGCAATTTAGCTTTCCTGCGGCGCAAGACTACTGGCAAATATCTGCTCTGAACTCTAGATgaacctccctccatcccctcctctcccattctctctttgtcagccagccagccagggtcAGCCTCATACCTTGGTGCGAAAACAAGGCTGGGAGTTTGTCCTGGTGCTGGTCAGCCTGTAGCCCCCACCGTGGCCCCGGAGGCCCCTGGAAGAGAACAGGACATGCCCTTATCACACAGTGGGCCCTGGCCCTCGTCACTCGTTCCTCTGCTCTCCATAGGCAGATAAGGGAGGTGGGGTTTGGTGGAAATGGGGGTGAGGGAGGATGTCTTATCTACCTTCTACGTCACTCACTGACCTCTGTCACTCTGTAGGGGGCAAACAGATCCCTTCTGATTGGCTTGGGACTTTTCTCTGACCTCTTGCCCTCTGTTGTTGAGGATGTTGTCTTTGTTATGATATGTCACATTGATAGGAAAACATTGTCCTGGTCAAACAGGTTTATAAATCTAAACATTTGTATCTGTATCTTTTATGTCTGTCTTAAATATTTAGCTATTGACTTATGGACTTTAGGTTCAGTCCTGTTTTGTAATTGAAAACCATATGGAATGCACTCGTCACTGTAATTATTTAAGATGAATGACGAAATGTTATTATCCAAGTTTACGAACAAGCACTCGCACAAAGCACagtacagtatgtcctgtgcGAGACACAAGTACAAGTTCACAGATGGTGTTAGAGCCACAGCAGCGTAGCGTAGACTTCTACGTGCATACCTGATGTCCATGTGGTCTCCCCAGCAGTCGTCTGTTGCTCATCTTTCCACCCTTAGATAGATCCTTTTATGAGCAGCTCTTAATGGAAGAAACACGGCTGAGCCTGGAGCAGTGGCGTGGGCAGCGTAaagtcaaatgtttttttaaaaaggcaTATACAGTGCTCTCAGAAAGCATTTATACCCcgtgacttattccacattttgttgtgttacagcctgaatgaaaaatgtattcaatgttttttttttcccacccatctacacaaaataccccttAATGGCGAAGTGAAAAAGTTGTTTTTTTaagtgtttgcaaatgtattaaaaatcaaatgaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1853821 lncRNA downstream 1768 37164797 ~ 37165002 (-) True G1620081
TU1853819 lncRNA downstream 2934 37163433 ~ 37163836 (-) True G1620079
TU1853798 lncRNA downstream 17694 37148857 ~ 37149076 (-) True G1620058
TU1853750 lncRNA downstream 18786 37116860 ~ 37147984 (-) True G1620015
TU1854329 lncRNA upstream 260006 37503335 ~ 37516479 (-) True G1620509
TU1854386 lncRNA upstream 264000 37507329 ~ 37509070 (-) False G1620563
TU1854327 lncRNA upstream 264314 37507643 ~ 37511232 (-) True G1620507
TU1854385 lncRNA upstream 265420 37508749 ~ 37509070 (-) True G1620563
TU1854326 lncRNA upstream 314006 37557335 ~ 37560090 (-) True G1620506
XR_005037707.1 mRNA downstream 130247 37029254 ~ 37036523 (-) True LOC118941471
XM_021574093.2 mRNA downstream 325970 36764705 ~ 36840800 (-) False LOC110497753
XM_021574091.2 mRNA downstream 409286 36748853 ~ 36757484 (-) False fam98b
XM_021574085.2 mRNA downstream 427141 36719921 ~ 36739629 (-) False LOC110497751
XM_036954739.1 mRNA upstream 418103 37661432 ~ 37821260 (-) False stxbp6
XM_036954740.1 mRNA upstream 418103 37661432 ~ 37821260 (-) False stxbp6
XM_036954741.1 mRNA upstream 418103 37661432 ~ 37821260 (-) False stxbp6
XM_021574104.2 mRNA upstream 476520 37719849 ~ 37821260 (-) False stxbp6
XM_021574105.2 mRNA upstream 476520 37719849 ~ 37821260 (-) False stxbp6
TU1853281 other downstream 398071 36654523 ~ 36768699 (-) True LOC110497753
TU1852753 other downstream 761434 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 1769987 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 3687334 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 3753553 33412219 ~ 33413217 (-) True G1615793
TU1856858 other upstream 1713695 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 2121928 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 2152739 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 2158727 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 2161463 39404792 ~ 39411784 (-) False G1623037

Expression Profile