RNA id: TCONS_00049421


Basic Information

Item Value
RNA id TCONS_00049421
length 886
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_024811
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34641440 ~ 34643204 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGTATAAGATTcagatggtatgataaccttgggtaaACATGTCACGGTTCCACGATAtcacggtattgtaattactgctctaaaatatgctgtttttaaatgtctggTTTCAGAATCAGATCACTGCAGTGCAGCAAAAAAAACACCAAGGCAATGTTgtctaaaaatataataaacacctGAAAACATGCAATCCTATCTATGATTTAGACAAATTATCATTTAATTctcaaaataacatttatttaagttGACAAGACATATCTTGagatgtttgtaaaacaaaaccaataaaaatacaaataaaacaataacttAAATATAGAATCTAACTCCAGAGAAGCTGAGAGTGGctctcttttaaaataaaaaacaaaatctatCAATATTATTCAAGAAATGTATATGAATCCAACAAAAACAAACCCCCACAGCTTACTGAAGGCTGcctgcaaacaaaaacaacagttcAACAGCCATATTGAGCATTTCCATCACTGTCAGTCCAAAAACTACAGTGGTTTCAGTCTAAAATGATGTAAACATCACTAATTGGGATAAATAAACGATTTTACTCGAGAGTATTTCGTTTTAAATCGTGTAAAGTGAAACATTAGGCCGAATGTGAACCCTGCACGCAGCGCCATGTGAGGATCTGTAACTTCCACATGTTTATCGCACGGTTAAACTATCCAACAAACTTGATTAACATTAAAACCCAAAACACTACAGCGCATTTTAACGACTGTCACATCGCTGTGTAATCGAGTAAATCCACTTACAGGCATTGTGAAGAGCTGCAGCTTTTCGCATTCGTGTGTTTTCCTTCGAATCTGGATCTCTCGGACTGAACTGCGCGGGGTTGCCAGGTGCAGCTACATAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049420 lncRNA downstream 129338 34478097 ~ 34512102 (-) False XLOC_024809
TCONS_00049419 lncRNA downstream 632956 34007807 ~ 34008484 (-) True XLOC_024805
TCONS_00049418 lncRNA downstream 671375 33963179 ~ 33970065 (-) True XLOC_024804
TCONS_00049417 lncRNA downstream 689246 33939113 ~ 33952194 (-) True XLOC_024803
TCONS_00049416 lncRNA downstream 689276 33939113 ~ 33952164 (-) False XLOC_024803
TCONS_00049108 lncRNA upstream 28864 34672068 ~ 34681696 (-) False XLOC_024813
TCONS_00049422 lncRNA upstream 290627 34933831 ~ 34938131 (-) True XLOC_024816
TCONS_00048883 lncRNA upstream 319459 34962663 ~ 34965071 (-) False XLOC_024817
TCONS_00048884 lncRNA upstream 329354 34972558 ~ 34973205 (-) True XLOC_024817
TCONS_00048885 lncRNA upstream 331879 34975083 ~ 34979558 (-) True XLOC_024818
TCONS_00048876 mRNA downstream 9390 34623747 ~ 34632050 (-) True XLOC_024810
TCONS_00048875 mRNA downstream 129338 34487700 ~ 34512102 (-) True XLOC_024809
TCONS_00048872 mRNA downstream 357296 34274691 ~ 34284144 (-) False XLOC_024808
TCONS_00048873 mRNA downstream 360029 34277253 ~ 34281411 (-) False XLOC_024808
TCONS_00048874 mRNA downstream 361360 34278687 ~ 34280080 (-) True XLOC_024808
TCONS_00048877 mRNA upstream 19154 34662358 ~ 34670413 (-) True XLOC_024812
TCONS_00048878 mRNA upstream 37814 34681018 ~ 34723937 (-) False XLOC_024813
TCONS_00048879 mRNA upstream 52585 34695789 ~ 34723976 (-) True XLOC_024813
TCONS_00048880 mRNA upstream 84724 34727928 ~ 34740627 (-) True XLOC_024814
TCONS_00048881 mRNA upstream 192349 34835553 ~ 34845302 (-) True XLOC_024815
TCONS_00048871 other downstream 386167 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 2620445 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 2733856 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 2963247 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048836 other downstream 3323312 31318012 ~ 31318128 (-) True XLOC_024776
TCONS_00048891 other upstream 448708 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048937 other upstream 1314950 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048942 other upstream 1415316 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 1611125 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 2317520 36960724 ~ 36975214 (-) False XLOC_024886

Expression Profile

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