RNA id: TCONS_00048877



Basic Information


Item Value
RNA id TCONS_00048877
length 1134
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_024812
representative True

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34662358 ~ 34670413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAGATGGTTCGGGAAACCGGCTACTATGATCAGCTCGGCGTGAAGCCCGATGCTTCACTGGATGAAATCAAGAAGGCGTATCGGAAACTGGCTCTGAAATATCACCCGGATAAAAACCCCAATGAAGGCGAGAAATTCAAACTCATATCGCAAGCCTACGACGTCCTGTCGGATGCCAAAAAGCGTGAGCTGTACGACCAGGGCGGCGAACAAGCCATCAAAGAGGGAGGAATGGCGGGAGGAGATTCGCCCATGGACATCTTCAACATGTTCTTCGGTGGCGGAGGACGAATGCAGAGAGAAAGGAAAGGAAAGAATTTGGTTCACCAGCTCGGGGTGACGCTGGAGGAGCTCTACAACGGCTCCACCAGGAAACTTGCTCTTCAGAAGAACGTGATCTGTCAGAAATGCGACGGTGTGTGCAATAATGatggaaaatCTATACATGTAGGTCTGTTGCGTTTAGGTTTTGTAGAGATTGTGCGTCAAGTTAGCTTGAAAAGTTCAGGGCTCGATTGCGCAAAAATCtctGGAGTGAGTTTTTTCAGTAGTGTCCTGATCATGCTGTCGATCGCAGGTATGAAGGACGGTCAGAAAATCACATTTAACGGAGAAGGAGATCAGGAACCGGGACTGGAGCCCGGAGACGTCACAATCATCCTGGACCTGAAAGAGCATCCCGTTTTCCAGAGGAAAGACAACAATCtgctgatgaagatgaagatccGGCTGGTGGAGGCGCTCTGCGGCTTCAAGAAGACCATCAGCACGCTGGACAACAGATCGCTGCTCATACACTCTCCTCCagGTCAGGTGATTAAGCCCAATGACTTGAAGTGTGTTCATAATGAGGGAATGCCTGTGTACAGAGAGCCCTTTGAGAAAGGCCTTCTCATCATACGCTTTGAGATTGAGTTTCCGGATGATCACTGGCTGCCGGAGCACATGCTGCCGGATCTGGAGCGTCTGCTGCCGGTACGAGAGCACATCATGCTGACCGATGACATGGAGGAGGTGGATCTCTGCCAAGTGGACTTCGAGAGTCAGCAGAGACGAAACCATAGCGCTGAAGCCTACCATGAAGATGATGAGGAAGAGCGCCGGCAGACTGGAGTCCAGTGCCAGacgcaatga

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000073440

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00049421 lncRNA downstream 19154 34641440 ~ 34643204 (-) True XLOC_024811
TCONS_00049420 lncRNA downstream 150256 34478097 ~ 34512102 (-) False XLOC_024809
TCONS_00049419 lncRNA downstream 653874 34007807 ~ 34008484 (-) True XLOC_024805
TCONS_00049418 lncRNA downstream 692293 33963179 ~ 33970065 (-) True XLOC_024804
TCONS_00049417 lncRNA downstream 710164 33939113 ~ 33952194 (-) True XLOC_024803
TCONS_00049108 lncRNA upstream 1655 34672068 ~ 34681696 (-) False XLOC_024813
TCONS_00049422 lncRNA upstream 263418 34933831 ~ 34938131 (-) True XLOC_024816
TCONS_00048883 lncRNA upstream 292250 34962663 ~ 34965071 (-) False XLOC_024817
TCONS_00048884 lncRNA upstream 302145 34972558 ~ 34973205 (-) True XLOC_024817
TCONS_00048885 lncRNA upstream 304670 34975083 ~ 34979558 (-) True XLOC_024818
TCONS_00048876 mRNA downstream 30308 34623747 ~ 34632050 (-) True XLOC_024810
TCONS_00048875 mRNA downstream 150256 34487700 ~ 34512102 (-) True XLOC_024809
TCONS_00048872 mRNA downstream 378214 34274691 ~ 34284144 (-) False XLOC_024808
TCONS_00048873 mRNA downstream 380947 34277253 ~ 34281411 (-) False XLOC_024808
TCONS_00048874 mRNA downstream 382278 34278687 ~ 34280080 (-) True XLOC_024808
TCONS_00048878 mRNA upstream 10605 34681018 ~ 34723937 (-) False XLOC_024813
TCONS_00048879 mRNA upstream 25376 34695789 ~ 34723976 (-) True XLOC_024813
TCONS_00048880 mRNA upstream 57515 34727928 ~ 34740627 (-) True XLOC_024814
TCONS_00048881 mRNA upstream 165140 34835553 ~ 34845302 (-) True XLOC_024815
TCONS_00048882 mRNA upstream 285955 34956368 ~ 34973211 (-) False XLOC_024817
TCONS_00048871 other downstream 407085 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 2641363 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 2754774 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 2984165 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048836 other downstream 3344230 31318012 ~ 31318128 (-) True XLOC_024776
TCONS_00048891 other upstream 421499 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048937 other upstream 1287741 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048942 other upstream 1388107 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 1583916 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 2290311 36960724 ~ 36975214 (-) False XLOC_024886

Expression Profile


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