RNA id: XM_021574176.2


Basic Information

Item Value
RNA id XM_021574176.2
length 2105
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110497802
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39278696 ~ 39285767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACACAACCGAGTAAGATTCTCTCTCATCAGCACCACCTCTCAGCATCCATTCCCAGCTAAACGGATTCTCCGGAATATTTGTTTTTACCTTGTcgacgacacacacacagcccaaacaGCGATGGATACCTCCGGGAAAGAGAAGGAGGCGATGCAGCTGATGGCTGAAGCCGACAAGAAGGTCAAATCCTCCGGCTCATTCCTGGGGGGGATGTTCGGgggGAGTCACCATAAAGTAGAAGATGCATGTGAGATGTACGCCAGAGCAGCCAACATGTTCAAGATGGCCAAAAACTGGACTGctgctgGTAATGCGTTCTGCCAGGGTGCCCGGCTCCACATGCAGCTGCAGAACAAACTGGACTCAGCTACTAGCTTCGTCGACGCAGGGAACGCTTACAAGAAGGCTGATCCTCAGGAGGCTATCAACTGTCTAAATGCAGCCATCGATATTTACACTGACATGGGTAGGTTTACTATTGCAGCCAAACATCACATCACTATCGCAGAGGTGTATGagtctgagctggtggacatagAGAAGGCGATCGCCCACTATGAGCAGGCAGCCGATTATTATAAAGGGGAGGAGTCCAACAGttctgCTAACAAGTGTCTGCTGAAGGTGGGCCACTACAGTGCTCAGCTGGAGCAGTATCCGAAAGCCATTGAGATCTACGAGCAGgtggcCACCAATACCATGGACAACCCCCTGCTGAAGTATAATGCCAAAGAGTACTTCTTTAAAGCCTCCCTCTGTCACTTCATAGTGGATGAACTCAACGCAAagCTGGCCATAGAGAAGTATGAGGAGATGTTTCCTGCTTTCGCAGACTCCAGAGAGTGCAAGCTGCTGAAGaagTTGCTGGATGCCCATGAGGAGCAGAACTGTGAGGCGTTTACTGAAGCTGTTAAAGAGTTTGACTCCATCTCTCGTCTGGACCAATGGCTCACCACCATGCTGCTCCGTATCAAGAAGACCATCCAGGGAGATGCTGGAGATCTCaaataaagagagatagaggggtgggTTGGGGGAGGATacaagagggagggatagagaaaaAGATGGCTAGatagagagatgatggagagaggatggacagagagagaaggagagatgagggagaaagggatggagggagagatataggGTTAGGGCAGTGGGGTGAAGGGAGACAGGTCTCTATGCGTTTGATGTGTTCAGTGTAAATAAGTCCATGGCTCCTGTAGTCTATCGTGTCTTACCATACCTTTCCTCACACTCCTGTCAAAAACGTTAGCAGTTTCAACTTAAAATAGGAGTTACCCAGCTGATGTAAAGTTACATCAACTTATCAAGTTGAGTTGACAAAACCAGGGAACAAATGATTAGATACATTATAGTATACAAGTTCATACAACTTTATATTTTAGGTCAGTGGGGTACACTTACACTCATGTTTTTAAGTTGAAAGCCttttacagtgcatgtcacacTTAACCTTCCTAACCTCTCCACTGAATGTCTTCCCTTGTTTGGGCCCTGTATGTTCATGTTTTAAAGTGTAGGGCTGTACAGATAGTGTGTGAAaaggtggagtgtgtgtgtgtgtgtgtggcacgcaCACAATGTATCACATTGAAGCCAATATATCTGTGCCAGTGCTGGttgctgttgtttttgttgttttgtgtgtgtgtgtgtgtgagagagagagagagaaacaaccaAAGGGACAccccgttctattcattctatttctatgctccCCTCAGATATGTTTTCCACCCCTAGACACTTCCCCTAACCCGCTACACACTTATGATCTGAAAGGATTGGATAGGTATAAGCACACACATATCCAATCCTCTCAGGTCTACACATGTGTTAAGGGTCAGAGGTTACAGGGTTAAGGCCAGAGATTATGGGAAGTGTctgtaatgtagtgtgtgttgcTGTGGTGTGTGTATTCCTCTCAGCATGTTGCCATGGTAAtgatgtgtgtgttcagtgttgtGTGCAGTCAAACTACAGGTTATCACACATATCTCTATGTTCATGAATTACCACACGTTTGTGCAAAAAAATTTACTAAAAATAAAACTTCCAACAAACTTG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1857073 lncRNA downstream 57778 39220683 ~ 39220918 (-) True G1622936
TU1857048 lncRNA downstream 71205 39205297 ~ 39207491 (-) True G1622918
TU1857042 lncRNA downstream 82601 39195487 ~ 39196095 (-) True G1622914
TU1857011 lncRNA downstream 106747 39171708 ~ 39171949 (-) True G1622892
TU1856886 lncRNA downstream 273300 39003830 ~ 39005396 (-) True G1622784
TU1857126 lncRNA upstream 40522 39326289 ~ 39326730 (-) True G1622987
TU1857178 lncRNA upstream 79490 39365257 ~ 39366325 (-) False si:dkey-229e3.2
TU1857176 lncRNA upstream 81275 39367042 ~ 39370430 (-) False si:dkey-229e3.2
TU1857177 lncRNA upstream 81275 39367042 ~ 39370621 (-) True si:dkey-229e3.2
TU1857218 lncRNA upstream 114473 39400240 ~ 39404651 (-) True G1623038
XM_021575231.2 mRNA downstream 262 39276243 ~ 39278434 (-) True LOC110498575
XM_021574172.2 mRNA downstream 14816 39242198 ~ 39263880 (-) True cdc5l
XM_036954769.1 mRNA downstream 47604 39224690 ~ 39231092 (-) True enpp4
XM_021574171.2 mRNA downstream 47994 39224690 ~ 39230702 (-) False enpp4
NM_001160648.2 mRNA downstream 289941 38985797 ~ 38988755 (-) True ampm1
XM_021574186.2 mRNA upstream 79491 39365258 ~ 39370631 (-) False si:dkey-229e3.2
XM_021574198.2 mRNA upstream 212853 39498620 ~ 39503300 (-) True si:dkey-196h17.9
XM_021573123.2 mRNA upstream 264732 39550499 ~ 39556400 (-) False ckba
NM_001124715.2 mRNA upstream 264735 39550502 ~ 39561200 (-) True ckba
XM_021574229.2 mRNA upstream 304574 39590341 ~ 39599313 (-) False LOC110497819
TU1856858 other downstream 319722 38957024 ~ 38958974 (-) True G1622757
TU1853281 other downstream 2509997 36654523 ~ 36768699 (-) True LOC110497753
TU1852753 other downstream 2873360 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 3881913 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 5799260 33478593 ~ 33479436 (-) True G1615810
TU1857173 other upstream 79490 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 110301 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 116289 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 119025 39404792 ~ 39411784 (-) False G1623037
TU1857215 other upstream 120849 39406616 ~ 39411784 (-) False G1623037

Expression Profile