RNA id: TCONS_00049422


Basic Information

Item Value
RNA id TCONS_00049422
length 3805
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_024816
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34933831 ~ 34938131 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatatatactgtatatggcaTTTACATACAGACATAATGCATAGCTTCAGGTTACAGGCTTTAAAAGTTATAATACACGTACAAAAAAAAGAGCATATTTGCATTTGATTGTGAACTGCAAGCTGCCATGAATGAATTTTGGTTCCAACATTTTTCTCCTCAACATAAAGGACAAATCAAACATAAAACTCTGGAGGAATAAGGAAACGAGGCATGGGTTTATAAAGTACATTCATCGTCTGAAGCATTGGTCTCAAATCTCACTCACAAGTGCAATTCTTTAACCTACTCATGGGtttttaaaacagttaagacAATGCATTGGTTCATCAGAAACATAAATGGAAATCATGTGACTGAACATAAAATCCACCATGGTGTGTGTGACAGGGGTGTGTGATATTAccgtaaataaaatacaatttcttttgataatgataattaaacaatattttgttgtgcatgtttttgtggaTGGTTTTACATCTGTTTtggataaataaatgcaaaatagaaTCTCCAGTAGgtggcgacaagaGCCAATCTAAACGAGCCATTTGTTGAATTACtcacttaaatgatttgttcaaaacagcTGACTCATCTATAAAGCATGTGGCTgtcttttaaatgaatcattgattcaGTGACTTCaatgatttattcagaaatttattcatttagggGGGAAAATGGCATTGTTGTTTTGACAAATATTTTCTACTTTGGTTTTGATTGGAACTTTTAATTAGCGAAAAAGTTAGATTTCTTTCGATAAAcagaattaaacaatattttgatgTGCATGTTTTTGTTGCTGATTTAATGCCTGTTTTAGATTAATAAATGTGAGACTAAAACAACCAGTTTGTGTCAACAAGTGCCTGTTTAAACGAGCCATTCGCTGAATTACTCACTTGTTCATTCTCTTGTTCAAAATAGCCAATCCGTTTAGAAATGAAGAATTTAACtgttttttaatgaatcattGATTCAGTTacacaaatgattcattcagaaattgATTAATTAGGGAACAAAACAgtgttgttttgaaaaaaaaaatctcaatattGTTAAGATTAAACAGTATTTTGACGAGCATGTTTTGTGGCTGGTTTTACGCCTGTCTtagataaataaatgttacacTAAAACCACCAGTAGGTGGCAACAAAAGCATGTTTTAATGAGCCATTTGTTGAATTACTTGTTCATTCACtttttcaaaacagctgatttatttggaaatgaaGCATGTGACTCGTTTTCCATGAATCACTGATTCAGttactcaaatgattcattcagaaattgattcattcaaaaacaaacCATCAAACAGTGCCGTTTTGACAAAAATCTTCTACTTTGGTTTTGTTTAGAACACATTCAATAAGCGGAACaaaaaaaaaggatgatattGTTGTCTGAAGTGTCAAAACAATAAATGGCAATGATATTCAGTGAAACATTACACTTACTTGCGTATTATTATCAAATCATTACAGGAAATATTACTGGATCTCCTAACTTAcaatcatttttgtttagttttttttgttcttttttttttatagtgattGACTTATTTAAAACGTTGACGATGAATATCACACACCCCGAACTCAAGAACAATCGCTAATTACAGCCAAGAGTCATCTGTCCTCTTATTGGACGCTTCAGAAGAAACCAAGTTCTCCTGGTCAGTAATACTTTCCTTTTTTTTGAAACATTACGGTATTGGTAAGTACAGTAGAGTGTAAAAGATTAAGGGCACTTAAAGCAGAGGCTGCATGTGCATTTGCTGTATTTAAAGTAAACCTCCCCATCTCAATAATGGTTAGATATTGCATCAGTAAAGCTTGTGCAGTGGTTATGAAGGAATGCTTgatcgtacaatctcattcatatacTGTTCCTATAAAAAGACATACTGCCGAAAATGTGCAATGAAGGAATGTCTTCAATACTGTGAAAGTCTTCTGCTATCCTACAATGTGAAATAATGTGCTCATGCATTAGATTCAACGCTAACATATTAACAAAGATTATACTGAAGCTATAAATGATTAGTGACAAACCATGCATCAAACAGTGCTAGTAATCGGACCAATGAAtttaaatcactttttacagCCGTGCATCAACAAAACGGCTTTAGATTGGTTATTATTTATGACTAAATGTACTTACAAAGGCTAGAAAATGTTCAATGGACTACAGAAATAATTAGTCCACAATTTCGTTAATTTCCTTCACATTTCCAGGCATGGAAATCAGAAAATTTCCTgatgtttgcagtttatttaagtgACGGGATACTGATCTAATGCTGATTAAGCAGCAGTATGTTAATATAcagcaaaacaaatgaaaatagaaatagtttgttttaaaaacatcaagGCCTGGAGCTGGTTTGGTCAAACGAGAAATATGATGTGTGTAAAAAAACTTCCTATATTTATACTGATTTGAAAATCATCTCAGAAGTGAATGAATCAGGGTCAGAAATTAGCTTTAGTAGCAATTAAGTggcagtttctgcattttttgaccaaaaatgaactttttttttgtctgttttgtcaaatatttcaATGCAATCAATcgattaatataataaaaacggTTACCAACAACACCAAACATGTTGCAATTGTATATAAATGATACATTTAAAGGAGGAACTCATTATATAACATGGTTGTACTATTATGATACTATTATTATTTGGTTGATCAGCGCTCTTGATGTTGTAATAATGGTTATAAATGCTAAAAATACATCATACGGGGCATGAAGTTGACTTTTTATTGCATcatatgaataaaaaatgcattgtttaGTCAAATATCTAATCAAAATGTTGTTATAttgagttttcttttctttttatctgAAAACAACAATtggttttcatttgttgtgactGGAAACCACAGATCGTCCACAAAATATGGATTTTATTTGAACTATTATGAAAAACAAGCttcctttttgttattttttgcaaaaaaaatgctctaaatcaccttttttattttaattttagagtCTATAAGACAAATCTCTTACATGGTTGTCGATTATGTGTCACTTTTGTTCGCATTGATGCCCTTTTTGTCACAAGACGCTTGTTGAATCCACCCTGAAATCAATCATATTCAAAACACTTACAGCTCAGAGAGGTTATGTTTGGTCGGCCGCATACAGGAATGCACTTAAAGCTTTGTTTTCTCCATATTCGCATATGCAGCAGTCTTAATGTTACTgccacattcacatacacacactgtataTTCACTCAAGATGATAACACACATATGTAACAGTCTTTGCCATGCAATACACATTATAAACATAAACACAAGTGAGCTACGTGAAAAAAACTGAGATAATACaagaataaatgttcatttagcaAAGCTTTAAGCCTGAAAAACATGTGAAAAGCTCTAGATGTGAAGGCACGACTGGTGTGTCCCTGATCTGAGGACAGTAAGATTGTGTTTagaaagacacacaaacacacatacgaacatatacacaaacaaacagacacacaaataaacacacatacacactgtgtTGGTTAGAAGTGTAACTGTGAAACACTGCTGAAgttgtgaatgaatgagtgaaggaAATCTCCAtcatctgctgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgttttttacGTCAGCAACCCCAATCGAGCCAGTTTGGCTGAGAGGAACGAATGAAGCACAAACACCACAGGCTTTGGTCCCGAATGAAGCTCAAACACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049108 lncRNA downstream 252135 34672068 ~ 34681696 (-) False XLOC_024813
TCONS_00049421 lncRNA downstream 290627 34641440 ~ 34643204 (-) True XLOC_024811
TCONS_00049420 lncRNA downstream 421729 34478097 ~ 34512102 (-) False XLOC_024809
TCONS_00049419 lncRNA downstream 925347 34007807 ~ 34008484 (-) True XLOC_024805
TCONS_00049418 lncRNA downstream 963766 33963179 ~ 33970065 (-) True XLOC_024804
TCONS_00048883 lncRNA upstream 24532 34962663 ~ 34965071 (-) False XLOC_024817
TCONS_00048884 lncRNA upstream 34427 34972558 ~ 34973205 (-) True XLOC_024817
TCONS_00048885 lncRNA upstream 36952 34975083 ~ 34979558 (-) True XLOC_024818
TCONS_00049423 lncRNA upstream 64024 35002155 ~ 35042110 (-) True XLOC_024819
TCONS_00049424 lncRNA upstream 113925 35052056 ~ 35116923 (-) True XLOC_024823
TCONS_00048881 mRNA downstream 88529 34835553 ~ 34845302 (-) True XLOC_024815
TCONS_00048880 mRNA downstream 193204 34727928 ~ 34740627 (-) True XLOC_024814
TCONS_00048879 mRNA downstream 209855 34695789 ~ 34723976 (-) True XLOC_024813
TCONS_00048878 mRNA downstream 209894 34681018 ~ 34723937 (-) False XLOC_024813
TCONS_00048877 mRNA downstream 263418 34662358 ~ 34670413 (-) True XLOC_024812
TCONS_00048882 mRNA upstream 18237 34956368 ~ 34973211 (-) False XLOC_024817
TCONS_00048886 mRNA upstream 106393 35044524 ~ 35045250 (-) True XLOC_024820
TCONS_00048887 mRNA upstream 107672 35045803 ~ 35046114 (-) True XLOC_024821
TCONS_00048888 mRNA upstream 109323 35047454 ~ 35047838 (-) True XLOC_024822
TCONS_00048889 mRNA upstream 130035 35068166 ~ 35095129 (-) False XLOC_024824
TCONS_00048871 other downstream 678558 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 2912836 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 3026247 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 3255638 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048836 other downstream 3615703 31318012 ~ 31318128 (-) True XLOC_024776
TCONS_00048891 other upstream 153781 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048937 other upstream 1020023 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048942 other upstream 1120389 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 1316198 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 2022593 36960724 ~ 36975214 (-) False XLOC_024886

Expression Profile

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