RNA id: TCONS_00048883


Basic Information

Item Value
RNA id TCONS_00048883
length 534
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_024817
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34956368 ~ 34973211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaTCTGAAGGTTTCAAATCTACTGATGACTGACAAGGGCTGTGTTAAAATAGCCGACTTTGGCCTGGCGCGTGTTTACGGTATCCCTTTACAGCCCATGACTCCTCGAGTGGTCACGCTGTGGTACCGGGCTCCAGAGCTCCTCCTGGGGACAAAGACGCAGACCACGGCTCTGGATATGTGGTAAGAAGCGCGCGGATGGACAGTGCAGCGTTATGCAAGCAGATTAGCTGTTCGGGTACTCGCTAAGATGCAGAGGGAAGGGGATACTTGGAAGGCATAATCCGTCTGCTCACGTGACCCCAGCACTGGCTTATTTGTTGCCGTTCAGAGGCTGTAGCGACCGCTTTGGTTGATGTTTTACATTTGGGTTTGTTTATCAAAAAtgaaaagggatagttcaccccaaaatgaatcATTTACTCTCTAATTAGTTGTTTCAAACCTTAAACACAAAAAGGAGAtatgttgaagaatgttggaaaccagtaaccattcaCTTCTATACTaattgaaagtcaatggttaccgatt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016572 histone phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0022008 neurogenesis biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-050417-94 Enables kinase activity. Acts upstream of or within histone phosphorylation; negative regulation of neuron apoptotic process; and neurogenesis. Predicted to be active in nucleus. Is expressed in brain; eye; liver; and pleuroperitoneal region. Orthologous to human CDK10 (cyclin dependent kinase 10).

Ensembl:

ensembl_id ENSDART00000137839

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049422 lncRNA downstream 24532 34933831 ~ 34938131 (-) True XLOC_024816
TCONS_00049108 lncRNA downstream 280967 34672068 ~ 34681696 (-) False XLOC_024813
TCONS_00049421 lncRNA downstream 319459 34641440 ~ 34643204 (-) True XLOC_024811
TCONS_00049420 lncRNA downstream 450561 34478097 ~ 34512102 (-) False XLOC_024809
TCONS_00049419 lncRNA downstream 954179 34007807 ~ 34008484 (-) True XLOC_024805
TCONS_00048884 lncRNA upstream 7487 34972558 ~ 34973205 (-) True XLOC_024817
TCONS_00048885 lncRNA upstream 10012 34975083 ~ 34979558 (-) True XLOC_024818
TCONS_00049423 lncRNA upstream 37084 35002155 ~ 35042110 (-) True XLOC_024819
TCONS_00049424 lncRNA upstream 86985 35052056 ~ 35116923 (-) True XLOC_024823
TCONS_00048892 lncRNA upstream 127384 35092455 ~ 35094787 (-) True XLOC_024824
TCONS_00048881 mRNA downstream 117361 34835553 ~ 34845302 (-) True XLOC_024815
TCONS_00048880 mRNA downstream 222036 34727928 ~ 34740627 (-) True XLOC_024814
TCONS_00048879 mRNA downstream 238687 34695789 ~ 34723976 (-) True XLOC_024813
TCONS_00048878 mRNA downstream 238726 34681018 ~ 34723937 (-) False XLOC_024813
TCONS_00048877 mRNA downstream 292250 34662358 ~ 34670413 (-) True XLOC_024812
TCONS_00048886 mRNA upstream 79453 35044524 ~ 35045250 (-) True XLOC_024820
TCONS_00048887 mRNA upstream 80732 35045803 ~ 35046114 (-) True XLOC_024821
TCONS_00048888 mRNA upstream 82383 35047454 ~ 35047838 (-) True XLOC_024822
TCONS_00048889 mRNA upstream 103095 35068166 ~ 35095129 (-) False XLOC_024824
TCONS_00048890 mRNA upstream 111858 35076929 ~ 35095129 (-) False XLOC_024824
TCONS_00048871 other downstream 707390 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 2941668 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 3055079 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 3284470 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048836 other downstream 3644535 31318012 ~ 31318128 (-) True XLOC_024776
TCONS_00048891 other upstream 126841 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048937 other upstream 993083 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048942 other upstream 1093449 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 1289258 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 1995653 36960724 ~ 36975214 (-) False XLOC_024886

Expression Profile

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