RNA id: XM_021574228.2


Basic Information

Item Value
RNA id XM_021574228.2
length 4082
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110497819
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39590341 ~ 39605843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATTTATTAGCATTGTCCACATGTGTATTTAATGTAACGCCCAACACGGCTTTCATATATCTATTTTGGCCAGCCTGTCATTCCTCGTATTTCCACGATATCGACTAGATAGGATACAGTTAGTCAGAATTGTCCAGAATGTACTTTTCGTATCAGGTTATAAGAATTAACGTAGCAgtttaggagaattaggttaaggttaggaaaaggatTTGGGTTAACTAAAATGCTAAATTTTTTCAACATTATATATCAATTTGACCTTAACCGTATACCATCTAGCCGTGATCGCATTCGCCTTGAAAAAAAGCTAGTAGTAGCCAGCTAGCTGGTTGCTAAATATCAGATTGTGGTTGTGCTTGGTAATGTTTAGCATTATATCGATATTTTCCCTATTATGGCTGTACGTTGGTTATGCAGGGGCCCCAAGACCGACCATTGGTCCTTCAGTGGTCAACCATCCTCCACAGTCCCCATGATGTGTCTACACTTTGCCACTTGTTTGGAAAGCCCTTTGATGGTGGAAAGAGGATGGACCATGgcagccagcagcagcagcagcagcacccaGCCATGATACGGCTCTATGAGGTCCAGCGGGAGGTCCAGTCTCTGGGCCCTCAGGTGTGCACCTTCAGCGGGTTGAAAAACGAGCGGGAGTATCGGCGGCTGGAGCGCGAGCTGACCCGGCTGCTCCTGGAGGTCGACCAGGTGGACACGGAGGGCAGGGCAGACCTACAGGGGGCACGCAAGAGAGCAGCCCAGGAGGTGGAGGGGCTGCTGCGCTACCTTGAGGAGAACGCCACCCACCCGTCCCGCCTGGCCATCGAGGAGCTGAGCCGGGAGGCCCAGGGGCTGGTGGAGCAGGGGGTGGTGGAACCACAGCGGGCCGGGGGCACAGCAGAGATCAGTGATGAGCTGGTGGATGCTGTGCAGGAGCTGATACTGAGGCTCACCCAAGTGAAGACAGGAGGGAGGGTGCCCCTCCGTAAGGCTCGCTATCGGGCCCTGACACGACTGTGTGCCGTGCAGGACGTGATCGAGGGGCGCACGCGCCAGCAGACCCTCCCCCTGTCAGAAGATACACACGTGGCCGTGCAGAGGATCAACCAGGTGATGGTGCAGGTGAGTGGGGCGCGCAGCCAGCTGGTGGCACTGCTGATGGGGCTGAGTGGGAGGGATAGCTGTGCCCACCTGTCCCGCGTGCTCACTGAGCTCCTGGTGGAGCTGGATGCCCTCGATGTGTCGGGGAACGCAGCGGTCCGGAACTACCGCAAACAGGTGGTGGAGGAGATCAACGGTCTGCTCAAACACCTGGacctggagggagagggagacgacACGCGCAGGTATGACTTGGCGCAGAATGACTCAATCCGTCAGATTGAGGCTGTGCGGGGTCGGGTGGGCCAGCTGCGCGGGGAGGTCCTGCGACACTGTGGGGTGGGCGACCTCTTCAGGCCCAAGCCTGAGCTCCAGAGTCTCCTCACACACCTGGACCAGGTGGACACGGCCCGTAACCCCTGTATCCGTGAGGCCCGCCGACGTGCTGTGCTGGAGGTCCAGGCTGTCATCACCTTCCTGGACCTCCGTGAGGCCCTGATCTGCCGCCAGCCAGGCTCCAACGAGCCCCCACAACACAGGGCTGTGTGGATGGTCCTGGGCAGCCTGTCAGACCTCCAGGCCCAGGTACTCTGCTTCAACGGCAAGCGGGCCGACAAGAGCTACATATTGCTTGAGGAGCTTCTAACTAAACAGCTGCTGGCCCTGGATGCAGTTGACCCACAGGGTGATGAGATGACCAAAGTAGCCCGCAAGCAGGCAGTCAAGTTTGCCCAGAACATCCTCAGCTATCTGGACATGAAGACAGACGAGTGGGAATACTAATCCACTGCAAAAGACTATACATAGCTGAAGTATGCGTACGCCGACCTATTAAATTGTATATATACACTGGTGTATCATCACTCTAAGAGTTGGGGTCTGTACATTTTGACTAAATCCCAGAATGCACTGCAGCAGCgcttttggtctctttgttgtcaTTGTCGCTGGCCTGTGGGTAAAAACAACAACCCAAGAAAATTTTTGTGAAATACAATTTGGAGAAAAGTGTTATGACGTGCTTTTGAAAGTTTATTGAGCATCTTTTTGAAATCTACTGTATGTGTATGAGTTTTGATCAgtgttgttgtgtggttgtaAAGCCTGCGGCCAAAAGCACTGAAGCCTGTTATGGTGGTGGTCAGAGTAGTTAAGATCCAGTCACGTCATCTGTTTTTCAAAAGCAGGAGTGGGACTAGAGCAATTACATCTCAATGGTATCCATGTTTTGCTTGACTACTTTGGAGGTCAGTTGTAAATTAACTCAGCCAAACGATGTCTGTGATGTCTCAAAATACTTCTTTACCGAGATGAACAGAGAGTGTACATCAGCACTGTGAGACAAGATCTTCACCTGTTAATTTTGCttatcctctgctctctttcttcctttaATCAACACTTCTGAGGCAAACTCCCCATAACCATGGCTGGACACACCAGTCTCTGGCAACTGTTCAGGTGACAAATGAAAAGGAGAGCTTCTTCATGGCTTTACCCACTGTCCTACAATAATGAGGATGGGCATGGAACTCAGTGAAGTTAAACGGCCTGTGAGATCCTTTGTCAACTTGGAGGGTTAGTTAAAGGCCTAGTTATAAAGAATGAATATTTGTAGACACGATAAATTACTATGTTTGTCTGTAATTTGTAGCTAAATGTTGATTGTGACTTGTGTGTTTGCGAGGCTATATCTTGTCTGCATTGAATTTAGTGAAGGGGAAAAACAGAGTGTGGAGGTGGTTTTGTTTTTGTCTGTGACTTTTCTATTGTCAGAGGAGTATGTCTGGGAGCCCTGGTGAGGGTCACTGATTTTTACCTTACTATTATTATAGCTGTTGACAGTGATCACAGTGGACAGGGCAGTCTAAAACCGCTTCAGCAGAGGTAGGGAGCTATtagtaaaaaaaatctgtctttccTTCCTTTCACCCCCCTTCTGGTGTTTTTATCCCAAACAAAGCAACCCCCACCATACTCCACACACAAGCTAGGGAGGGACTGGCTGCTACCTTTTACAAAAGAATCCTGAAGGCACAAAGACCGGAAAAAGCACTAAATGGGGGACTGAGGAGCACCTAGGCTATTGTCACCGTGAGAAATTTGCACTTTTTACAAATTTTCAGTATTATACCTCAACTGTTTGTAAATGAACCCCTGCATGCCTGGTAGATAGCCCTAAGTACTAACAGAGCATAAACAGTCCTCAGTTAACTCCCACAGAACTCCCAGACTCTCAACATGACAGGGGTTATTCAACCCTTCCCCTGctgctgttgaaaaacatatgGCACAAAAACAGTGAAATCCAGCTACACGGACATGGGATGTCTGACTCATAAGTGAGATAATGATTCGATTAGACAGTGTTCAGTGTGGCCTTCATGTAATGGGTGTTTGTTCACACAGCAAACCTAATGCTGTCTCAAAACAACCAAccctgccagatcagaggctaacACTAGCTACTGTTATAATTCTCCTCTTGATCTGCTCACGTACCAGTAGGTGTGATTATCAACACACAGTTGCACACAACCTTCCAAAATTGAACATACCTCTTATCTGAAAGCAATGCAAGGTGTTCTATCTGAACCACGTATGCATCAGTTGCATCCAGTGTTTGAAAATGCATTGAACATTTTAGGGGTAGAATGTATAATTTTGTCAGTGAAGAATACCAAAGCTGATTTATTTCAAGGAAACTTTTTTATGTTCTTTACTCTGGTGAACCTTTTGGTTTGCTTATTTTGGCAGGAATGTGTATGTGGGGTACAGTATTAAATGTTTTAATTTGACGATCTGTTTCTCCAGTCGCCTTTGACTAAGTGGATTGTGACAGGCTCTGCTGTGTTTCTCATACAAGATGCACGTGTACAAACGCACACTGAGGTTTAAATGATGTGTGAATGCTTCAATAATAGGTTTGTTTGACTTTTTATTCCCACTCCAAAATAAAAAAAGGTGTGTCCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1857336 lncRNA downstream 15242 39574681 ~ 39575099 (-) True G1623130
TU1857249 lncRNA downstream 31740 39518977 ~ 39558601 (-) True G1623061
TU1857312 lncRNA downstream 59057 39530860 ~ 39531284 (-) True G1623106
TU1857248 lncRNA downstream 70177 39518977 ~ 39520164 (-) False G1623061
TU1857218 lncRNA downstream 185690 39400240 ~ 39404651 (-) True G1623038
TU1857335 lncRNA upstream 46214 39651731 ~ 39652207 (-) True G1623129
TU1857334 lncRNA upstream 49152 39654669 ~ 39656645 (-) True G1623128
TU1857379 lncRNA upstream 62038 39667555 ~ 39670662 (-) True G1623154
TU1857404 lncRNA upstream 69922 39675439 ~ 39675770 (-) True G1623175
TU1857410 lncRNA upstream 75533 39681050 ~ 39681996 (-) True G1623181
NM_001124715.2 mRNA downstream 29141 39550502 ~ 39561200 (-) True ckba
XM_021573123.2 mRNA downstream 33941 39550499 ~ 39556400 (-) False ckba
XM_021574198.2 mRNA downstream 87041 39498620 ~ 39503300 (-) True si:dkey-196h17.9
XM_021574186.2 mRNA downstream 219710 39365258 ~ 39370631 (-) False si:dkey-229e3.2
XM_021574176.2 mRNA downstream 304574 39278696 ~ 39285767 (-) True LOC110497802
XM_021574240.2 mRNA upstream 84041 39689558 ~ 39692818 (-) False LOC110497823
XM_021574241.2 mRNA upstream 84409 39689926 ~ 39692818 (-) True LOC110497823
XM_036954789.1 mRNA upstream 349609 39955126 ~ 40084178 (-) False syne2b
XM_036954786.1 mRNA upstream 349609 39955126 ~ 40097978 (-) False syne2b
XM_036954787.1 mRNA upstream 349609 39955126 ~ 40097978 (-) False syne2b
TU1857216 other downstream 178557 39396068 ~ 39411784 (-) False G1623037
TU1857403 other upstream 69922 39675439 ~ 39681529 (-) False G1623175
TU1859108 other upstream 861827 40467344 ~ 40547622 (-) False LOC110497838
TU1859105 other upstream 862896 40468413 ~ 40529271 (-) False LOC110497838
TU1859107 other upstream 862896 40468413 ~ 40544096 (-) False LOC110497838
TU1859109 other upstream 862896 40468413 ~ 40529271 (-) False LOC110497838

Expression Profile