RNA id: XM_021574258.2


Basic Information

Item Value
RNA id XM_021574258.2
length 1954
RNA type mRNA
GC content 0.43
exon number 10
gene id snapc1b
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40342356 ~ 40349828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttggtcatgtagtatatcTGCCAATGCCTTGTGCTCATACGGCACTATTTTGTCCTGACACCCGCACTGTAGCAAAACACATGACGTCATCAGCAATGCGCTTGTGGTCGTTGATGAGTCGAACTAGCTGGTTAATTGCAATGTGGTGGGACAATTTTCCTTGCTTTATTTAACCAAGCAGCCAACACATTGCGGAAAAGTTGTTGATAATGGATTACTGCAAAGACCGTCTTAAAGCAGACTGTGAGATGTTGCTGAGTAGATTTCAGCAGACAGAATCGGTGCGATACGAGCAATTCTTGACCATATGGAAAGAGATGAAGTTCCAAagtattttctaTGGAAAAATTGAAAACAATCTAAAGAGGCTGTTCAGTCGTGAAGTCCTGGCTACAGCGTACACATACTTTCTGCCACCATACACCTTTCAGATTAGAGTTGGGGCCTTGTACCTGCTCTATGGGCTATACCACTGCCAACTGTCCACACCAAAGGAAAAGACAAGGCTAGCCCTGAAGGACTGGGAGGAAGTGAATAAGTTCCAGCAGGATGCAATTAGTGCCCAGCACTTTGATGTGGTCTACATCATCAGACAGCTCATCTCACAAAAAGCCTTCTACTTCACTGTCATGCCCACGCCACTGATTTTCAATGTGAAGAAGAGCAACAAGAACTCAAGAACCGTGTGTGAGGATTTCCTTGAGCGAGCGGCCCGGCCACAGGAGCTGGTCAGCATGGACATGCTTGAGGAGCTGGCGAACGTACATGAGCACTATGAGCAGGTGAAGGCATCAATTTCAGCCAAGCCAGGCCAGCCAGACCCATCCATCAATCTGATCCACAAGAACTTGGTGCCACGGCTACACAATACTGTCGTGGGATTCTACAACTGGCAGAAGGCTCAGGGTTCGGAAGATAGAGTAGATGGAGATAGCGGCGAGGGAACTTCAAATAAGCAAGAGAGTTCCCAGCGAGCTCAGCTTCTTGCATCCATCAAGTCTAAATCATATGGTCAGATAGTGGAGGCCTCCAAGGCCCGGCGACACCGGcaggttgagagggatgaggtggTGCTTGCTAAGGAGACCACGTACCATAAGAGACACAAGTCACTCAAACAAAGGACCAGTCATCTGACCCAAGGCGCTGCAAGGGAAGAAGCTCTGAAAACCACCAGCCTGTGGTGCATGAGTCAACTTGAAGCTCAAGAAACAAcgggaaaaaaaaagaaaaggaaatTCAAATGGTGACATCACAGAAGAGGAAAAAGTTGGGTTGGTTTAGAGTCAGTCAGACATCAATCCCTGTGTACAACCACAATCATCATATTTGGTACAACTGATTTTATCCAGCATACATCTGGTTTCACCATAGGTGTTGTTTAATCACTCAAAATGCAATGCTTTTAAAGTCTGGCACATAAGGAAGTTAGTCTCTAGGTGGTACCCTTCATTTATGAAGGCTTTCGAAGACATGCAAAGATTTTGTTCATGTCGcagtaaaacatttaattgtaTTGTGCTGGTATCAGTCAATGATATGGATCATTTGTTTCCATCGCTGACAATTTTATTAACTACTTGATTCTTGAAAATATTGAGAGAGAAAAGTTAAATTACGTCGAAAACCAAGTTCCCTTTCAAATGCCTATGATGTTTTTGATGCTGTTGTTGGAACATCAAATGTTATTACTGTTATGGAGTTATGAGTTCAGAGAACATAATGTTGTCACATATGTATGTCTCTTTATCAAAATCTATTGTTCACGTGcccaatacaacaggtgtggactttacagtgaaatgcttacttacaagcccattcccaacattgcagttaaaaagtaagacaaataTTTGAAATAAGGAAATAGTAACAAGGTACAAGCAGTATGAGTTCTGAGGTCTCTGTTTATGAcgtcacttttttttaaataaaaattcaTTTTTACAG

Function

GO: NA

KEGG:

id description
K15208 SNAPC1; snRNA-activating protein complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1859055 lncRNA downstream 25680 40313828 ~ 40316676 (-) True LOC110497832
TU1857852 lncRNA downstream 58404 40282939 ~ 40283952 (-) True G1623572
TU1857819 lncRNA downstream 71724 40270351 ~ 40270632 (-) True G1623540
TU1857813 lncRNA downstream 74066 40268039 ~ 40268290 (-) True G1623534
TU1857812 lncRNA downstream 75133 40266952 ~ 40267223 (-) True G1623533
TU1859104 lncRNA upstream 39500 40389328 ~ 40390006 (-) True G1624649
TU1859117 lncRNA upstream 80422 40430250 ~ 40432231 (-) False LOC110497839
TU1859121 lncRNA upstream 80422 40430250 ~ 40465921 (-) False LOC110497839
TU1859128 lncRNA upstream 80422 40430250 ~ 40434313 (-) False LOC110497839
TU1859120 lncRNA upstream 80496 40430324 ~ 40465921 (-) True LOC110497839
XM_036954800.1 mRNA downstream 1144 40317304 ~ 40341212 (-) True syt16
XM_036954801.1 mRNA downstream 1145 40317304 ~ 40341211 (-) False syt16
XM_021574255.2 mRNA downstream 9789 40317304 ~ 40332567 (-) False syt16
XR_002469707.2 mRNA downstream 25643 40312976 ~ 40316713 (-) False LOC110497832
XM_021574252.2 mRNA downstream 29794 40294567 ~ 40312562 (-) True LOC110497831
NM_001124288.1 mRNA upstream 4048 40353876 ~ 40375782 (-) True hif1a
XM_036954802.1 mRNA upstream 32756 40382584 ~ 40416025 (-) True LOC110497835
XR_002469717.2 mRNA upstream 80392 40430220 ~ 40465939 (-) False LOC110497839
XR_005037722.1 mRNA upstream 80392 40430220 ~ 40465939 (-) False LOC110497839
XR_005037723.1 mRNA upstream 80392 40430220 ~ 40465939 (-) False LOC110497839
TU1857403 other downstream 660827 39675439 ~ 39681529 (-) False G1623175
TU1857211 other downstream 930572 39402056 ~ 39411784 (-) False G1623037
TU1859108 other upstream 117516 40467344 ~ 40547622 (-) False LOC110497838
TU1859105 other upstream 118585 40468413 ~ 40529271 (-) False LOC110497838
TU1859107 other upstream 118585 40468413 ~ 40544096 (-) False LOC110497838
TU1859109 other upstream 118585 40468413 ~ 40529271 (-) False LOC110497838
TU1859111 other upstream 118585 40468413 ~ 40544096 (-) False LOC110497838

Expression Profile