RNA id: TCONS_00048891


Basic Information

Item Value
RNA id TCONS_00048891
length 458
RNA type processed_transcript
GC content 0.46
exon number 5
gene id XLOC_024824
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 35068166 ~ 35095129 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCCAAATTTTGTATCCTTCCTTCACGAACAGAGAGAAGGCAAAAAAGAGGAAATATAGTAATGAATCATGAATCTTAAAGGCAAAGTGATGGAGACGCCATCAAGGTGTTTGTGCGGGTTCGACCGTTGACTCAAGGCACTGGTTTAAGCACAGATGGAGATCACAGCCTGTGTTTGACCGTGAGCTCACCGCAGACTGTCAGATTACACTGTAAACCAGAGCCACGGACTTTTACGTACGACCATGTAGCTGACATGAACACCAGCCAGGAGGAGGTATTCTCCAGCGTGGCTAAAAACATTGTGGAGTCCTGCATGAATGGATACAATGGCACCATTTTTGCTTATGGACAAACAGGCTCGGGAAAGACCTTTACTATGCTGGgtcctTCAGAGCTGGATAATTTTTCTGATGAGCTGCGTGGTGTGATTCCTCGAAGTTTTGAATACCTCTT

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0030516 regulation of axon extension biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-050622-16 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within regulation of axon extension. Predicted to be located in cytoplasm and spindle. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in several structures, including ectoderm; nervous system; pancreas primordium; spinal cord neural keel; and spinal cord neural tube. Orthologous to human KIF15 (kinesin family member 15).

Ensembl:

ensembl_id ENSDART00000127909

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049423 lncRNA downstream 49802 35002155 ~ 35042110 (-) True XLOC_024819
TCONS_00048885 lncRNA downstream 112354 34975083 ~ 34979558 (-) True XLOC_024818
TCONS_00048884 lncRNA downstream 118707 34972558 ~ 34973205 (-) True XLOC_024817
TCONS_00048883 lncRNA downstream 126841 34962663 ~ 34965071 (-) False XLOC_024817
TCONS_00049422 lncRNA downstream 153781 34933831 ~ 34938131 (-) True XLOC_024816
TCONS_00049425 lncRNA upstream 7013 35102125 ~ 35139170 (-) False XLOC_024826
TCONS_00049426 lncRNA upstream 176166 35271278 ~ 35276350 (-) True XLOC_024851
TCONS_00049427 lncRNA upstream 217764 35312876 ~ 35313623 (-) True XLOC_024853
TCONS_00049428 lncRNA upstream 253504 35348616 ~ 35360185 (-) False XLOC_024854
TCONS_00049429 lncRNA upstream 477556 35572668 ~ 35600292 (-) False XLOC_024857
TCONS_00048888 mRNA downstream 44074 35047454 ~ 35047838 (-) True XLOC_024822
TCONS_00048887 mRNA downstream 45798 35045803 ~ 35046114 (-) True XLOC_024821
TCONS_00048886 mRNA downstream 46662 35044524 ~ 35045250 (-) True XLOC_024820
TCONS_00048882 mRNA downstream 118701 34956368 ~ 34973211 (-) False XLOC_024817
TCONS_00048881 mRNA downstream 246610 34835553 ~ 34845302 (-) True XLOC_024815
TCONS_00048893 mRNA upstream 2050 35097162 ~ 35101673 (-) False XLOC_024825
TCONS_00048894 mRNA upstream 2951 35098063 ~ 35101396 (-) True XLOC_024825
TCONS_00048895 mRNA upstream 7259 35102371 ~ 35102824 (-) False XLOC_024826
TCONS_00048896 mRNA upstream 8301 35103413 ~ 35104129 (-) True XLOC_024827
TCONS_00048897 mRNA upstream 10515 35105627 ~ 35106751 (-) False XLOC_024828
TCONS_00048871 other downstream 836639 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 3070917 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 3184328 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 3413719 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048836 other downstream 3773784 31318012 ~ 31318128 (-) True XLOC_024776
TCONS_00048937 other upstream 863042 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048942 other upstream 963408 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 1159217 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 1865612 36960724 ~ 36975214 (-) False XLOC_024886
TCONS_00048972 other upstream 2049856 37144968 ~ 37145083 (-) True XLOC_024891

Expression Profile

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