RNA id: TU1859117


Basic Information

Item Value
RNA id TU1859117
length 1546
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110497839
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40430220 ~ 40465948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttatttgtgtgcaGTGTGCATGTATTTATAGATATGTCTCAAATACTAAATCAGAGAACTTCTCACCTCAACTTTACATTATCACACACTGCAGTTTTGCTGGTAatgactactactattattattactcctacaactattactactagacacacacacacactgcccccctCTCCCCTACTTTCCCTGGGTAACCGTATACGTTTCTACGGTGTTAATGATGGCAGTGTAGTGAATGATGGATGTGTGTTTTGAGTGCTTACATCATCCCCACCATGGCCTTCTCCTTCCTCTGCCACACTACTGTGGTGCCCATCTACTGTGAGCTGGACCAGTCAgtaccctgcctgcctgcctgactgacgCAGCCCTTACACATCCTTCTAAACAGTGATTTTTCTGCCATTGTAATCCTTGGGCTGGCCGTGtgtgtaaaaaaaatgaaataaaaaataaagatacaAAAAAACCTAATATTTATTATTCATTTTCTTGAATGGAAAAACACTTTCAGTGTAAAACTTCaatgactaaaaccagatataaagtatgttgAAATTATGATGGTActattatttttaaatgttatttttgagAACTagcaatcaccaaaataaaagctagacagtcagacagagactGAGCTAGACAGAGAATTGAAAATTCCCAAAACAATGATTTAAGCAGTATTGGTTTTGTTGTGTTTGAGCAAAAGAACACAGTATATGCCATGGAAAAATCAATTTAATTGCAGGAAATTggttttaaaactgcaaaaatgtatCTTGGCTCCATGGACAAATGTGTATAATTGGCTTAAAAATGCAAAATGAAATGGGCAGTGACacacctcacagagagagagatagctggTTGACACTACAAGCTCTATTAAATCCATGGTGTCTCTACCTCCTCCTAAAATGTTATATTGGACCAGTCCTTCACTTTGCTTTATCTCTCTGACAGGCCACATGGACACAGAGCTGTTGCTAGGCTACGAAGTGAACCTTCCGAGTGATGTGTTGGTGATGGAAAAGAGACcatggtctcagcattgactccatGTCAAATTAAATGTTCAATTAAAAACTAAAATGCCTGAGCGTCTGACAATCCTGCTGGCTGTGCTGCTGACTGTGTTTGGGGTTGTGGGCTCTGTTTCTGCTGATCTTCAGCCTGTTTGTGGGACTGCTCAGTCTGTGTCATCGTGGTCACCTGGGCAGAGAACCCCTGAACAGGACCACATGACCAGACAAGCCATGTACCTGCTCCATGGAGCCTAAAGGGAAAATGCTGCCAGATAAATCATATTTGGCAGCAAACCAGGACGCTATGACCACCAAACAGGCCAGTGGTAGGACCACAAGATCACTGCATCCAGACTCTGAAAGCAGAAGACTGCCCAGTTACTGAATGTTGCTCTGATGTATTGAGTGAATATACTATACCTTCCTCTATACCGCACCATAGAAGAAGTCATAAAAATGCTTATCAACTATTTCATTATATGATCAATTTATTGTACtgtaaaatgttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1859104 lncRNA downstream 40244 40389328 ~ 40390006 (-) True G1624649
TU1859055 lncRNA downstream 113574 40313828 ~ 40316676 (-) True LOC110497832
TU1857852 lncRNA downstream 146298 40282939 ~ 40283952 (-) True G1623572
TU1857819 lncRNA downstream 159618 40270351 ~ 40270632 (-) True G1623540
TU1857813 lncRNA downstream 161960 40268039 ~ 40268290 (-) True G1623534
TU1859110 lncRNA upstream 36039 40468270 ~ 40547622 (-) False LOC110497838
TU1859112 lncRNA upstream 98550 40530781 ~ 40544096 (-) False LOC110497838
TU1859113 lncRNA upstream 98550 40530781 ~ 40544096 (-) True LOC110497838
TU1859264 lncRNA upstream 151612 40583843 ~ 40584868 (-) True G1624775
TU1859271 lncRNA upstream 161812 40594043 ~ 40594264 (-) True G1624780
XM_036954802.1 mRNA downstream 14225 40382584 ~ 40416025 (-) True LOC110497835
NM_001124288.1 mRNA downstream 54468 40353876 ~ 40375782 (-) True hif1a
XM_021574258.2 mRNA downstream 80422 40342356 ~ 40349828 (-) True snapc1b
XM_036954800.1 mRNA downstream 89038 40317304 ~ 40341212 (-) True syt16
XM_036954801.1 mRNA downstream 89039 40317304 ~ 40341211 (-) False syt16
XR_002469719.2 mRNA upstream 26629 40458860 ~ 40465939 (-) False LOC110497839
LOC110497838 mRNA upstream 36023 40468254 ~ 40544009 (-) False LOC110497838
XM_021574267.2 mRNA upstream 153697 40585928 ~ 40588482 (-) True LOC110497843
XM_021574268.2 mRNA upstream 187221 40619452 ~ 40643379 (-) False LOC110497844
XM_036954803.1 mRNA upstream 187828 40620059 ~ 40643379 (-) False LOC110497844
TU1857403 other downstream 748721 39675439 ~ 39681529 (-) False G1623175
TU1857211 other downstream 1018466 39402056 ~ 39411784 (-) False G1623037
TU1859108 other upstream 35113 40467344 ~ 40547622 (-) False LOC110497838
TU1859105 other upstream 36182 40468413 ~ 40529271 (-) False LOC110497838
TU1859107 other upstream 36182 40468413 ~ 40544096 (-) False LOC110497838
TU1859109 other upstream 36182 40468413 ~ 40529271 (-) False LOC110497838
TU1859111 other upstream 36182 40468413 ~ 40544096 (-) False LOC110497838

Expression Profile