RNA id: LOC110497838


Basic Information

Item Value
RNA id LOC110497838
length 1299
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110497838
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40467344 ~ 40547622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACAACTAAGGGTGTCCGAGATGCAAGACAGCAAAATACAGGAATCAGTCCCTGAAACGAATGGTGGATGTTTGTGGCCACACGCTATGTGAGAGCTGTGTGGACATGCTGTTTGTGAGTGGTTCGGGGGAACTGTGTGCAGTGTGGCACGCCCCTGAGGAAGACTAACTTCCACATGCAGCTCTTCAAAGACCCAGCCATCGACAAGGAGGTGGAGATCCGCAAGAAGatgCGAGAGCAGGAGGAGCTGCTGTTGTTGGAGGAGCAGGAGCATCGCAGGCTGGAGGCTCTGCAGGAGGAACAGAGACAGCTACAGGGCAGGAGGAAGAGCAAGCAGGCTCTACTAGATAATCTGGAACGCTCTcatgtcaccaccaccaccatcctgCTGGCACCAACACAAGGACCGGACTGCCCAGCTGGAGACTCAGATTGAGAAGCAGAAACAGGTGGTCAAACCCACCATCTTCTCCACCGGCATCCCTATGGGTCAGACAGTGTCCTGTATAGAGGAGGTTCTGTACAGCTACCAGCCCATCAATAGCCACACTTACAGAACCCCCGTGCCTGAGCTAAAGCTGCTGGGACGTCTTGGGTATCTGAACCACGTGCGCATTGCCCAGCCCCAGGACATAACTCAGGACATGCGTGTCATCGAGCCATCCAGGATGCCGTTACTGGACTGACCCCCTCTGGAACTGACACAGAAACTCAGAAATATGAAGCTGTCAATTATCATAGGACTCAAATGACGCCCCCTGTTCTACATTGTGGTGGGAGCTATGGACAGTGGACTTTGGTCTGAAGTCAGATCAGGATGTATATGTTGCCATTTTTGTATGATcttattttattaaaaaaaaacaaaaaaaaaacatatgaaGCCAGTTGTTGGATAAGAAAACTATTGAAACAATGCCTATTTGTGGGACCTGGATAATGGACCAGTATTTCAAATACAGTCAACACATACCTGTTTGTATGTTCTTCTTAGGTCAAGGCATAACCATGATTTAGATCATGTCAGCCTTATTGACACGATTATAAAATAACATGAACAgagttgaaaaataaaatgtacaaTTCAAGGTCTCAGAATGAGCTCCTTGGTCAAATATATTCAATGTGTTGTCTCCGCACACTTTTGTCTCTTTGGGGCTGGTTCTTCTATGGCTTCTGAGGAGAGGACAAATGGTATTAGTATTTTCAGTCTACAGTCTTTCAGAGAGTGCATGTGTGTTATACTGTTTAGGGTTGGTGCCAATTCAAATTAAATGTGACATTTCAAATCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1859121 lncRNA downstream 2333 40430250 ~ 40465921 (-) False LOC110497839
TU1859120 lncRNA downstream 2333 40430324 ~ 40465921 (-) True LOC110497839
TU1859128 lncRNA downstream 33941 40430250 ~ 40434313 (-) False LOC110497839
TU1859117 lncRNA downstream 36023 40430250 ~ 40432231 (-) False LOC110497839
TU1859104 lncRNA downstream 78248 40389328 ~ 40390006 (-) True G1624649
TU1859264 lncRNA upstream 39834 40583843 ~ 40584868 (-) True G1624775
TU1859271 lncRNA upstream 50034 40594043 ~ 40594264 (-) True G1624780
TU1859272 lncRNA upstream 50823 40594832 ~ 40595089 (-) True G1624781
TU1859209 lncRNA upstream 80562 40624571 ~ 40627635 (-) True LOC110497844
TU1859308 lncRNA upstream 137134 40681143 ~ 40681411 (-) True G1624817
XR_005037727.1 mRNA downstream 2306 40430220 ~ 40465948 (-) False LOC110497839
XR_002469717.2 mRNA downstream 2315 40430220 ~ 40465939 (-) False LOC110497839
XR_005037722.1 mRNA downstream 2315 40430220 ~ 40465939 (-) False LOC110497839
XR_005037723.1 mRNA downstream 2315 40430220 ~ 40465939 (-) False LOC110497839
XR_005037724.1 mRNA downstream 2315 40430220 ~ 40465939 (-) False LOC110497839
XM_021574267.2 mRNA upstream 41919 40585928 ~ 40588482 (-) True LOC110497843
XM_021574268.2 mRNA upstream 75443 40619452 ~ 40643379 (-) False LOC110497844
XM_036954803.1 mRNA upstream 76050 40620059 ~ 40643379 (-) False LOC110497844
XM_036954804.1 mRNA upstream 80554 40624563 ~ 40643379 (-) False LOC110497844
XM_021574269.2 mRNA upstream 90910 40634919 ~ 40643379 (-) False LOC110497844
TU1857403 other downstream 786725 39675439 ~ 39681529 (-) False G1623175
TU1857211 other downstream 1056470 39402056 ~ 39411784 (-) False G1623037
TU1859224 other upstream 85756 40629765 ~ 40630208 (-) True G1624738
TU1859223 other upstream 86569 40630578 ~ 40631738 (-) True G1624737
TU1859319 other upstream 151466 40695475 ~ 40695761 (-) False LOC110498350
TU1859437 other upstream 525754 41069763 ~ 41080099 (-) True LOC110497863
TU1859566 other upstream 600098 41144107 ~ 41162412 (-) True LOC110497865

Expression Profile