RNA id: XM_021574270.2


Basic Information

Item Value
RNA id XM_021574270.2
length 1780
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110497844
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40619452 ~ 40643379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTGCAACATCCGGGTATTTTTTTGAGTCCACTGTTTGGTTTAGCTAGTGTTTGCAGGCTGTGTCAAATTCAAGTGAATAGGCTGGGGCTTGACACTCATTTGGCCACAACAGCTCCGGCCTAAAAATTCAAAGGAGGGACATTTTAACTATACTTTACGTCGACAAATGTTAAAGTAATGCATCCCTGGTTTAGTCAGAACAGGGAGTTCCGCACTTTCACAAATTGATGCACTGTGAGgtgattgctagctagctaacgttacccgCAAACTCCCTCCATCTCGTCGGTGTTTCTGTTTCGGTCACAGCACCTCTGCTCTGTTGCTGTCTTTACAACTTCAAAACAGGTCTTGCGGATTTTGGTTTTAAGAGCTACAATGGGGGCGTTTTTGGACAAGCCAAAGATGGAGAAGCACAATGCTCATGGTGAGGGGAACAGTCTGACCTATGGCCTGAGCAGCATGCAGGGCTGGAGGGTGGAGATGGAGGATGCGCACACGGCAGTCATTGGCCTGCCTCATGGGCTCGACCCTTGGTCCTTCTTTGCTGTCTATGATGGGCATGCTGGCTCCCAGGTGGCCAAATACTGCTGTGAGCACCTGCTGGAGCACATTACCAGCAACCCAGACTTCCAGAGTGGTTTGGAGCCCAACGTAGAGAGTGTGAAGATCGGCATCCGCACAGGTTTCCTGCAGATTGACGAGCACATGCGGAACATCTCAGAGAAGAAGCACGGTGTGGACCGCAGTGGCTCAACTGCGGTGGGGGTCATGATTTCCCCAGGCCACATCTATTTCATCAACTGTGGAGACTCCCGGGGTCTTCTGAGCCGTGGAGGAGCTGTGCACTTCTTCACACAGGACCACAAGCCCAGCAACCCactggagaaggagaggattCAAAACGCCGGAGGCTCTGTCATGATCCAGAGAGTGAACGGCTCTCTGGCTGTGTCCCGGGCCCTGGGAGACTTTGACTACAAGTGTGTGCATGGCAAGGGCCCCACTGAGCAGTTGGTTTCACCAGAGCCTGAGGTGTATGCCATTGAAAGGTCTGAGGTGGAAGATGAGTTTATTGTCCTAGCCTGCGATGGCATCTGGGATGTCATGGCCAATGAGGAACTGTGTGACTTTGTCAGGTCCAGGCTAGAGGTGACCAATGACCTTGAGAGGGTCTGCAATGAAATTGTTGACACTTGCTTGTACAAGGGGAGTCGGGACAATATGAGCGTTGTGCTGATCTGCCTCCCAGGGGCTCCAAAGGTGACTGCAGATGCCGTGAAAAGGGAAGCAGAGCTGGATAAGTACCTGGAGAGCAGAGTAGAAGAGATCATAAAGAAGCAGGGAAACGAAGGGGTTCCAGACTTGGTCCACGTGATGCGGACGTTAGCATCAGAGAGCATCCCTAACCTCCCTCCTGGGGGTGAACTGGCCAGCAAGCGAAACGTTGTTGAAGCAGTGTACAACAAACTCAACCCATACCGAAGTGACGACACATCCAGAACTGGAAAAAATGTAATTGGTTAAAGTGAAGACTTCAAGATATTGCTGTTAATACCAGGGATCTCAATCTCAATTGCCGGAAAGCTCTGCTCACTTAATCGTACTCTTTCTTGAACAATGTCTTGGACTTTATTTACATTTATTCCTGTCCAAGTTTGTAACTAGTGTAGGACAAAATTAACCTCTTGGGTGGAAAGATCAGCCCTCTTGCACGTCTCCAGGAGTTGAAATCGAGACCCTTTGGATGTAGACCCAGAGTCTGAAGGgtttttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1859209 lncRNA downstream 8058 40624571 ~ 40627635 (-) True LOC110497844
TU1859272 lncRNA downstream 40604 40594832 ~ 40595089 (-) True G1624781
TU1859271 lncRNA downstream 41429 40594043 ~ 40594264 (-) True G1624780
TU1859264 lncRNA downstream 50825 40583843 ~ 40584868 (-) True G1624775
TU1859113 lncRNA downstream 91597 40530781 ~ 40544096 (-) True LOC110497838
TU1859308 lncRNA upstream 37764 40681143 ~ 40681411 (-) True G1624817
TU1859321 lncRNA upstream 54057 40697436 ~ 40697709 (-) True LOC110498350
TU1859422 lncRNA upstream 261259 40904638 ~ 40905362 (-) True G1624923
TU1859454 lncRNA upstream 326154 40969533 ~ 40969797 (-) True G1624954
TU1859435 lncRNA upstream 406927 41050306 ~ 41051596 (-) True G1624936
XM_021574267.2 mRNA downstream 47211 40585928 ~ 40588482 (-) True LOC110497843
LOC110497838 mRNA downstream 91684 40468254 ~ 40544009 (-) False LOC110497838
XR_005037727.1 mRNA downstream 169745 40430220 ~ 40465948 (-) False LOC110497839
XR_005037731.1 mRNA downstream 169754 40430220 ~ 40465939 (-) False LOC110497839
XM_021574272.2 mRNA upstream 23307 40666686 ~ 40674956 (-) False LOC110497845
XM_021574273.2 mRNA upstream 23307 40666686 ~ 40674956 (-) True LOC110497845
LOC110498350 mRNA upstream 45717 40689096 ~ 40699267 (-) False LOC110498350
XM_021574275.2 mRNA upstream 114185 40757564 ~ 40781257 (-) False tdrd9
XM_021574274.2 mRNA upstream 114185 40757564 ~ 40788239 (-) False tdrd9
TU1859223 other downstream 3955 40630578 ~ 40631738 (-) True G1624737
TU1859224 other downstream 5485 40629765 ~ 40630208 (-) True G1624738
TU1859111 other downstream 91597 40468413 ~ 40544096 (-) False LOC110497838
TU1859319 other upstream 52096 40695475 ~ 40695761 (-) False LOC110498350
TU1859437 other upstream 426384 41069763 ~ 41080099 (-) True LOC110497863
TU1859566 other upstream 500728 41144107 ~ 41162412 (-) True LOC110497865
TU1859580 other upstream 551054 41194433 ~ 41194759 (-) True G1625066
TU1859988 other upstream 1202876 41846255 ~ 41850433 (-) True G1625428

Expression Profile