RNA id: XM_036954816.1


Basic Information

Item Value
RNA id XM_036954816.1
length 733
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110497858
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40960368 ~ 40965227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGgcggggggtggagacaagcacaagacatgTGAAACAAAacgtattagtcacatgcgccgaatacaacagGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12193 VPS24, CHMP3; charged multivesicular body protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1859422 lncRNA downstream 56440 40904638 ~ 40905362 (-) True G1624923
TU1859321 lncRNA downstream 264093 40697436 ~ 40697709 (-) True LOC110498350
TU1859308 lncRNA downstream 280391 40681143 ~ 40681411 (-) True G1624817
TU1859209 lncRNA downstream 334167 40624571 ~ 40627635 (-) True LOC110497844
TU1859272 lncRNA downstream 366713 40594832 ~ 40595089 (-) True G1624781
TU1859454 lncRNA upstream 4306 40969533 ~ 40969797 (-) True G1624954
TU1859435 lncRNA upstream 85079 41050306 ~ 41051596 (-) True G1624936
TU1859534 lncRNA upstream 155624 41120851 ~ 41122447 (-) True G1625032
TU1859581 lncRNA upstream 231418 41196645 ~ 41196974 (-) True G1625067
TU1859626 lncRNA upstream 303592 41268819 ~ 41272024 (-) True G1625105
XM_021574286.2 mRNA downstream 2256 40950956 ~ 40959546 (-) False LOC110497855
XM_021574287.2 mRNA downstream 2256 40950956 ~ 40959546 (-) True LOC110497855
XM_036954813.1 mRNA downstream 41647 40858672 ~ 40920155 (-) False LOC110498351
XM_036954814.1 mRNA downstream 41647 40858672 ~ 40920155 (-) True LOC110498351
XM_036954812.1 mRNA downstream 41648 40858672 ~ 40920154 (-) False LOC110498351
XM_021574295.2 mRNA upstream 28776 40994003 ~ 41033626 (-) False LOC110497861
XM_021574296.2 mRNA upstream 28776 40994003 ~ 41033626 (-) True LOC110497861
XM_021574300.2 mRNA upstream 87639 41052866 ~ 41080347 (-) False LOC110497863
XM_021574306.2 mRNA upstream 180937 41146164 ~ 41162883 (-) False LOC110497865
XM_021574309.2 mRNA upstream 207806 41173033 ~ 41176834 (-) False LOC110497867
TU1859319 other downstream 266041 40695475 ~ 40695761 (-) False LOC110498350
TU1859223 other downstream 330064 40630578 ~ 40631738 (-) True G1624737
TU1859224 other downstream 331594 40629765 ~ 40630208 (-) True G1624738
TU1859114 other downstream 417706 40468413 ~ 40544096 (-) False LOC110497838
TU1859437 other upstream 104536 41069763 ~ 41080099 (-) True LOC110497863
TU1859566 other upstream 178880 41144107 ~ 41162412 (-) True LOC110497865
TU1859580 other upstream 229206 41194433 ~ 41194759 (-) True G1625066
TU1859988 other upstream 881028 41846255 ~ 41850433 (-) True G1625428
TU1860762 other upstream 1290008 42255235 ~ 42255797 (-) True G1626105

Expression Profile