RNA id: XM_036954845.1


Basic Information

Item Value
RNA id XM_036954845.1
length 3984
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110497892
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42144572 ~ 42158726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACGCAGTGTATTCTGGCAACGACCAGTcccaaacctttttttttttcttcagcacGGGAGTTGTATTGCTTTGGATACAGGAAGTAGAGCTGTGTAACTGTTGTCAATAAAGGGCAAAACATAAATCCAGTTGATCAATCAGTTGTCTGTCATACCCGACTGTTAGTTTGCCTGAATTGCAATTTCTACATTGCAAATCGAAGTAAAACATGTCAACGACTGCTCAACTATTCGAGGAGCCCTTTGATGCAGACGAGTACATAGAGAGGTTGGCCTGGAGAACCCCTGGAGGAGGGTCCAAAGGAGGAGCAGAGGCATTCGACCCCAAAAGGCTGCTGGAGGAGTTTGAGAACCACATAGAGGAGCTGAAGCATCTGGATGAGAAGATCCAGCGGCGGGTGGAGAAGCTGGAGCACCAGTGTCACAGAGAAGCCAAGGAGTTTGCCCACAAAGTGCAGGACTTACAGAGGAGCAACCAGGTAGCCTTCCAGCACTTCCAGGAGTTGGACGAGCACATCAGCTATGTGGCCACCAAGGTGTGTCACCTTGGTGACCAGCTGGAGGGAGTGAACACGCCCAGGCAGAGGGCTGTGGAGGCCCAGCGTCTCATGACCTACTTTAATGAGTTCCTGGATGGGGAGCTTCGCAGTGATGTCTTCAACAACCCAGAAAAAATTAAGGAAGCTGCTGATATCATTCAGAAGTTGCATCTCATAGCCCAGGAGCTGCCATTCGACAGGTTTGCAGATGTTAAGGCCAAGATTGCAAGTAAATACCACGACCTGGAGCGCCAGCTGATCCAGGAGTTCACGGCGGCCCAGCGTAGGGGCGAGATTGGCCGCATGCAGGAAGTCGCTGCGGTCCTCTTACACTTCAAGGGCTATGCACACTGCGTGGATGTATATATCAAGCAGTGCCAGGAGGGGGCGTACATGCGTAGTGATGTGTTTGAAGACACTGCACTCCTCTGCCAGCGGGTCAACAAGCAGGTGGGAGAGGTCTTCCAGAGCCCAGAGACCGTCATGGCCAAACTCATCCAGAACATCTTTGAGAACAAACTACAGGCCCACGTAAAAGAAAAACTGGATGAAACCCGCCGCTCTGATGTCGAACAATACCTCAAAAACCTCTATGACCTTTATACCAGGACAACGGCCTTGGCTTCCAAGCTGACCGAGTTCAACCTGGGCTCAGACAAACACACCTTCCTGTCCAAGCTCATTAAAAACATCTTCTCCACCTATCTGGAGAGCTACATTGAAATGGAGAAAGATTACCTCCGCACGCGCAGTGCCATGATCCTGCAGCGCTACTACGACTCCAAGAACCACCAGAAACGTCCACAGGGTGGGGGCAGTATCCAGGAGCTGAAGGAGCGGATCAGGCAGCGCACCAACCTGCCCCTGGGGCCCAGCATTGACACCCACGGAGAGACCTTCCTCTCCCAGGAGGTGGTGGTCAACCTGCTGCAGGAGACGCGCCACGCTTTCGAGAGGTGCAACAGGCTCTCAGATCCCTCGGACCTGCCTAAGAACGCCTTCTCCATCTTCCTGCTGCTGGTGGAACACCTGTGTATGGACCACATCGACTACGCACTGGAAATCGGCCTCTCCGCCATTCCCTCAGCTGATGCCAAGAATGCCAACCTGTACTTCCTGGATGTGGTCCAGCAAGCCAACACCATCTTCCACCTGTTTGATAAGCAGTTCAACGACCACCTAATGCCTCTTATCAGCTCATCTCCCAAACTGACAGAGTGCCTGCACAAGAAGAAGGAGGTGATTGAACAGATGGAGGTGAAACTGGACACGGGCATAGACAGGACACTGAACTGCATGGTGGGACAGATGAAGCACATCCTGGCTACGGAACAGAAGAAGACAGACTTCAGGCCTGAAGATGAGAACAACGTCATGATCCAGTGCACCGCAGCCTGctccaaggtgtgtgtgtatgtgagtcgGCAGGTGGAGCGTGTGCGGAAGTCCATGGATGGTAAGAACGTGGACACAGTGCTGACGGAGCTGGGCGTGCGTTTCCACCGCCTCATCCACGAGCACCTGCAGCAGTACAGCTACAGCTCCATGGGAGGCATGCTGGCCATCTGCGATGTGGCCGAGTACCGCAAAAGTGCCAAGGACTTCCGGGTTCCTCTTGTGCTGCAGCTCTTTGACACGCTCCACGCCCTGTGTAACCTCCTGGTGGTTGCCCCAGACAACCTCAAACAGGTCTGCTCCGGGGAGCAGCTCACCAACCTGGATCGGAACCTTCTGCACGCCTTCGTACAGCTGAGAGTGGACTACCGCCAGGCCAGACTGGGACGACACTTCAGCTAATGGCCCTGGCCAATGCGTCACTGTCCAGCCATCGGTCCGTCCAATCACCACGGCCTATGATTTCACAAAACTCACCATGGAAACGGAATTCAGCCAACCTGGATGGAGTCTTCACTGAGTTAGTCTTTCATTCTCATCTGCAGTAGCACCTTTTGCTTTGTCCATCCTAGAGGCCAAGAAAGACCACCGCCATTCACAGTTGGTCTACAgatagcctagaggttagagaagggtttcttaaactatgggtcgggacccaaagtgggccctgAGTTTGTGGGAGGTGGGTCGCCAGTTATGAGAATACATATATAATCAAAcactatttcttcttaatttggTTTGTTGGAGGATCACAGGAGTACGGTCAATTTCTCATTTGGATCTCGAGCTGATAAAGTTTAAGAAACcctgggttagagcattgggccagtatccgagaggtcgctggttcgaatactcgagctgacaaggtgaataATCTGTttatgtgcccttgagcatggcacttaaccctagtttgctccaggggtgcgatactactatgactgaccctgtaaaacaggGCTGTCAAACTCATTCAACGGAGGGCATAGTATCTGCTGGTTTTtggttttcctttcaattaaaacCTGGACAACCAGTTGtgaggagttccttactaatcagtgtacttgattgatgaattaaggtcaagGGAGGATGAACACCCGTGGACACTCAGCCCTCCgtagaatgagtttgacacgtgctgtaaaacaacacattttcacTGCACCTTTCACCTAAAATTTGCCCTTGACTTCTGCAACACAAATAATTTGAAATGTATATGACTCTTGTTTTGAAATACTAATCCACCAAAACATGATTGTGTCATATTACCGGTAAAATCAACCTTGGATTTCCAAGCTTTCAACTTTAACATAAAGCGACATTTTGTTTTGATTGTGCCAAATGTATATTCTGTGGCTGCACTTGTACACAGGAACAGACTTTAAAAGCTACTGCAAAGAGAAAGTTGAGCTCTTCATAGCTCAGGCCTGTCATGGCACTGACTGACTGCATACTGGAAACAGCCACCCCTCACACAGAACTCCCAGAGGAATCTACTCTCACcaacatccttctctctctcctcccgaaCCAAGCCTGCTAAAGAGCTCTGCTGTGCCTGCCAGAGAGAGTCACATGACCACCTCTCTCCGACCCCTGACCtcaagggagaggtgaggggtcaACACACTGGCTGTGATCCCAGCCGTAATCATGTCTGAGAACCACTCGGGGGTCCTGGGTGGTCCGTCTGTGGCTAAGATGACAGGTCCGAGAGGTCAGTGAATGTGTCATTGTAATTGCATAGATCAACACCTGCTTATCCAACGAGGCTTACCATCCGTGCTCTCCATTGTGGACTTATCTTCATCGCTTAAGGAGATAATGAGTGAAAGTTAAGTGGACTTCACAGGGCCTACAGGAGGCCAGGGAGGGTCAAGATCGCTGTGCCTCCGTGTTCTCTATGGTGGTAATTGTTTGTCTGTCTATCAGTGTCGGTGAGACCAAACCTGAAGTTATGTATTATGCTAAGCTATTCCCAGTATACTGCTGTTTACCTTAATGAgtcataaaaaaaatgtgtgtttaa

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0048793 pronephros development biological_process
GO:0048278 vesicle docking biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19984 EXOC5, SEC10; exocyst complex component 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860171 lncRNA downstream 48239 42096103 ~ 42096333 (-) True G1625603
TU1860169 lncRNA downstream 50715 42093617 ~ 42093857 (-) True G1625601
TU1860166 lncRNA downstream 54014 42090110 ~ 42090558 (-) True G1625598
TU1860143 lncRNA downstream 100654 42043656 ~ 42043918 (-) True G1625575
TU1860139 lncRNA downstream 106667 42037617 ~ 42037905 (-) True G1625571
TU1860726 lncRNA upstream 56755 42215481 ~ 42215925 (-) True G1626075
TU1860737 lncRNA upstream 69632 42228358 ~ 42229565 (-) True G1626082
TU1860739 lncRNA upstream 73404 42232130 ~ 42232401 (-) True G1626084
TU1860751 lncRNA upstream 92242 42250968 ~ 42251503 (-) True G1626096
TU1860763 lncRNA upstream 97439 42256165 ~ 42256668 (-) True G1626106
XM_036954843.1 mRNA downstream 82512 42052670 ~ 42062060 (-) True LOC110497889
XM_036954844.1 mRNA downstream 82593 42052670 ~ 42061979 (-) False LOC110497889
XM_021574335.2 mRNA downstream 273611 41867674 ~ 41870961 (-) True vcpkmt
XM_021574334.2 mRNA downstream 273618 41867674 ~ 41870954 (-) False vcpkmt
XR_005037736.1 mRNA downstream 313046 41778940 ~ 41831526 (-) True LOC110497880
LOC110498354 mRNA upstream 13415 42172141 ~ 42173747 (-) True LOC110498354
XM_036954846.1 mRNA upstream 26475 42185201 ~ 42188926 (-) False LOC118941476
XM_036954847.1 mRNA upstream 26475 42185201 ~ 42188926 (-) False LOC118941476
XR_005037739.1 mRNA upstream 26475 42185201 ~ 42188926 (-) False LOC118941476
XM_036954848.1 mRNA upstream 26475 42185201 ~ 42189255 (-) False LOC118941476
TU1859988 other downstream 294139 41846255 ~ 41850433 (-) True G1625428
TU1859580 other downstream 949813 41194433 ~ 41194759 (-) True G1625066
TU1859566 other downstream 982160 41144107 ~ 41162412 (-) True LOC110497865
TU1859437 other downstream 1064473 41069763 ~ 41080099 (-) True LOC110497863
TU1859319 other downstream 1448811 40695475 ~ 40695761 (-) False LOC110498350
TU1860762 other upstream 96509 42255235 ~ 42255797 (-) True G1626105
TU1860882 other upstream 307099 42465825 ~ 42470702 (-) False LOC110498355
TU1860906 other upstream 481723 42640449 ~ 42641273 (-) True G1626232
TU1861008 other upstream 600568 42759294 ~ 42838434 (-) True G1626324
TU1861812 other upstream 1250001 43408727 ~ 43409109 (-) True G1627068

Expression Profile