RNA id: XM_036954847.1


Basic Information

Item Value
RNA id XM_036954847.1
length 2558
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC118941476
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42185201 ~ 42189497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTTAATGCCATCTGTCACAACCAGTAAGGTTTGTCTTCTGCCCTGATTCTTCTGCAGTTTCAAACATATCCAGCGATATGGAGAGTGGGATTCATCCATTCTTAGTAATAATGTATTTAAATGAATTGTGAGGAGATGACAGACTCTCCTGCATGCTCTGTGTGACAGGCTCTCCTGAAtgctctccatctttcctctctctgctccccctgctCACTTTCATAGATATCTCTGGTAATTACGGGATAAAGGCTTTTATAGCCCAGCAGCAACCTAGCACTGATTCACGTGAAGGTAGCATCTCGCAGGTCCTCCACAACCAGACAGTGACAGAGGAGCAGTAAGAACAGCAGCCTTTCACTGTGATAGAAATACAATGAAACCAATATGAAAGACGGAACAACTTAATCTTAAATTCATTTCAGGGCGCTTGAATTGCTTTATTCCTGGAGACGAAGTGGAGTGTGTTTGTTGGAGCTGTTCTCCTCTGAGGCTGATACACAGAGCTCAGTCCCCAGTCAGTGCTGTGATGGCTGGTGTACTGTCAGTGAGACATGCCCTCTAATGAAGCATTTGCTGAAGTGACAGATTCACAGACACAGACTGTTGTGGCTGCTGCCTCATTAAAGCAAACGAGCGAGAAAAGAGGAGTAGGAGGAATGTAGGGAGGGCTTTAAACCCCTCATCACTGATATATTTACAAATCCACACACTGAGACGGGAGAGAAGGAAACATCTCCATGTTATGCAAGTAGTCTGAACTTCCTCATTTTTGGAAAAGTCATGCTCCAACTTTGACCCTTATTTCCTGCTGTTGATGACTTCCTTGTTGAAAACGGAATTCTGGGAAAGTAGAGTGTATGTTGATGAGGCAGCTCTGTCTCTGATTCTCTACCCATGCCTGGGCAGTTTGGAacggggaggggaggaggtatgGGGCTCGAAAAAAGAACAGGGTCTTTCAAGCATTAACTTGGAGTTACAAAGTAACCTGTAGGGAGAGTTTCCATAGAAACACAGCTCATTATAATGAAAAAGTATAAAGACAGGGGGGTTGCACACACCTTCCATGTTAACCACAACTAAAACTGGCTACTGCACTTGTACAGTTGCAACATACAGAGAGGTGGTTTCAGAGGGGAAATGCTCATTTTTCCAATGGGAGGATATGAAGCCCACTTTGATTGATAGCTATAGATGACAAATGGATATCTGAGAGGTATGCCACCACAACGAGCAAATAAAGTTATTATGTAATTAATGGTATCATACTAAAGGGCTATGCTAATTTATCAAGAAAGAAAAGTCAACTACAGTATATCAAGATCCGTAGCAGCCGTGGCGGAGCATGCCGCACCACATACAGCCAAGCGAATGAAAGAGCCTGAGCGGAGGACTCTAAAACAAGTGAGATGAGACAAGTTCCTCTGATTTCAACACTAAAGGTAATTTATTAACACACCCAAATTCCTGCTTGGCTGACCAACAGACTAAAAGCAAAagcctagcatagcatagcaGCCTGACGGCCATAGCAGAGGACTAGTAGTGGAGTATGGGCTCTACAGGCTCCAGGTCCAGGCTCAGTCAGGTGGCCCCGTGTCACAGTCAGACAGAGGGAGACCTGGACCAGCAGGCCAGTCATCCCACTTCACATTGGACCATCCCTGCCATACCAACCCCACTGGAGCATCAACATGAGCCGCTGGGACATAGGAGGACTACCCAGCTGCCCCCACTGAAACTGGAAAACCCTGCAACCTTCCCACCGCTATCTACAGtatcaTCATATGTATCAAGCAGCCTCCCACAAAGTCAAATCAACATTTGGGGTCCAAGCATCATTCATCCTCAGCCACCACGGAGACTACAGGGCAGGGACCGGAGAGATGGGGGTGTCCTCCACTTTTCTACACCCAGCCAGGGGGCACACGGTGGCACCGGCCGCCTGCCGCAGGGAGGTCTCCTGGAGGCACAGATGGTCCTCAGTCAACAGGCccagcagagacagagagcccaCCAGAGACAAGTCAGAGAACAGCGGGAGCACGAGAGGATCTTCTATACAGATAATTTTGGAGCACCAAGCAGCAAAGGGATACATGGTGGACCGACTTTGAGGAAAACCTTACCTTGGATGCTGGACTGGAAGACAGAGAAACAAGGAGATCCAGTTCCCAAACACTTGAACTCTTTAGGGGATAGTGAGAGGGCTAGTAGGTGGGACATGAGGCCCAGGCCTCTGATAGACTGGCAGAGGTGGGACtttggttgaatcaacgttgttccacatcatttcaatgaaattacgttgaaccatcatgtaatagacgttgaattgacgtctgtgcccagtgggctatATCATGTGGAGAGCGTGATTTGGGAACCTGAACGGGACTAGGAGCTGTTTATGAGGTTTAGTAATCTGGACTAAACTGGATCTCCAATCTCATGTTGCAAAATGCTAATTAACTTTTCATGGACAATTTATTTAGAAAAAGCTGAAATTGTATCTAATTTATTTGGTAAAATGTTTGCATTTTACTGTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860171 lncRNA downstream 88868 42096103 ~ 42096333 (-) True G1625603
TU1860169 lncRNA downstream 91344 42093617 ~ 42093857 (-) True G1625601
TU1860166 lncRNA downstream 94643 42090110 ~ 42090558 (-) True G1625598
TU1860143 lncRNA downstream 141283 42043656 ~ 42043918 (-) True G1625575
TU1860139 lncRNA downstream 147296 42037617 ~ 42037905 (-) True G1625571
TU1860726 lncRNA upstream 26555 42215481 ~ 42215925 (-) True G1626075
TU1860737 lncRNA upstream 39432 42228358 ~ 42229565 (-) True G1626082
TU1860739 lncRNA upstream 43204 42232130 ~ 42232401 (-) True G1626084
TU1860751 lncRNA upstream 62042 42250968 ~ 42251503 (-) True G1626096
TU1860763 lncRNA upstream 67239 42256165 ~ 42256668 (-) True G1626106
LOC110498354 mRNA downstream 11454 42172141 ~ 42173747 (-) True LOC110498354
XM_036954845.1 mRNA downstream 26475 42144572 ~ 42158726 (-) True LOC110497892
XM_036954843.1 mRNA downstream 123141 42052670 ~ 42062060 (-) True LOC110497889
XM_036954844.1 mRNA downstream 123222 42052670 ~ 42061979 (-) False LOC110497889
XM_021574335.2 mRNA downstream 314240 41867674 ~ 41870961 (-) True vcpkmt
XM_021574346.2 mRNA upstream 1345 42190271 ~ 42199634 (-) False LOC110497894
XM_021574345.2 mRNA upstream 1345 42190271 ~ 42213019 (-) True LOC110497894
XM_036954855.1 mRNA upstream 130170 42319096 ~ 42339373 (-) False LOC110497897
XM_036954854.1 mRNA upstream 130170 42319096 ~ 42339822 (-) False LOC110497897
XM_036954856.1 mRNA upstream 131012 42319938 ~ 42339375 (-) False LOC110497897
TU1859988 other downstream 334768 41846255 ~ 41850433 (-) True G1625428
TU1859580 other downstream 990442 41194433 ~ 41194759 (-) True G1625066
TU1859566 other downstream 1022789 41144107 ~ 41162412 (-) True LOC110497865
TU1859437 other downstream 1105102 41069763 ~ 41080099 (-) True LOC110497863
TU1859319 other downstream 1489440 40695475 ~ 40695761 (-) False LOC110498350
TU1860762 other upstream 66309 42255235 ~ 42255797 (-) True G1626105
TU1860882 other upstream 276899 42465825 ~ 42470702 (-) False LOC110498355
TU1860906 other upstream 451523 42640449 ~ 42641273 (-) True G1626232
TU1861008 other upstream 570368 42759294 ~ 42838434 (-) True G1626324
TU1861812 other upstream 1219801 43408727 ~ 43409109 (-) True G1627068

Expression Profile