RNA id: TU1860813


Basic Information

Item Value
RNA id TU1860813
length 1171
lncRNA type read_through
GC content 0.40
exon number 1
gene id LOC118941477
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42367530 ~ 42375160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTCCCTGCTAAAGTAAATGATTCAGAGAAATCTATAAGTAGTACTTCAGTAAGGACACACCAGTTTCCTGTAAAGGATGAAAATAAGAGCTTGGCCTAAGTGGAAAACCACTGTATCCCCAAAATAGAGCCAGGGCACCCATGTGAAGAGCATTTGATGTATGAGCACAAATGACAGAGGTACAACAGAGCTAATTTGGAATCAAATCTCAGTGAGTTTTACAAGTACATTCCTCCACTCATTGTTATTGGAACATAAAGAACCAAGCTTTCTTTTTGATGTTTACTCAACCGTTATGACCACCATAAAAAATAAATTGATTAACATGTTTAAATAGGAAGagacaatttatgcttgatctaaAAATGTGGTAGGAGGCACCGTGTGGATGATGTGACGCAATTGCGGAGCCTACGGAGGAATGCAGAGGCCAAAATTAGCTCTGTACTGCGTCGCCGTAGCCTCAACTTGTGTAGCAATGGAGAGCTCCATTTAGCTCCATATAGCTCCGCAtttacatgattggttgacggtaggtgagggcgggaggtcctgtataaacacaaactcacttccttgacaacagctctgcgctgctccacgaagcgcaagaagtatgaatgccctgacttctgaaGAGGCCGTACCGCTgtaaatgctgcacggccaatGTAGACATCGGATTGACCAAGTAGTGCCTATATATGAACTTCATGGCCTGTGAAACGACATGCTGAAATCCAGAGCACTTATTTGGTGAGTTTAGGCACTTTTTTGTTTATGGTTTCTGTGATGTGCTGTTCAAACTGATTTTACTGTGTTGCTCTCCACAATTAACATCTCAGATGGTAGCGTAGGCCTACACCGTGAACATAACACAGTGACTCGTTTTGGGATGATCAGTTTGTTTTTATGCTGGACATTTGTTCATAAAACAATTCTAGTTCCCCTGAAATTAAACAAATAACTTAGATTTTATAAGACACTAGATTTATCCTATAATATTCTGTCCGTTTCACAAAACCACTTCTAACAAACactatttataataataataataataacaaaaattATAGCAAATAAAGACCATAAAATGGCAACCTTCCCAGGGATGCACTAAAAATTACCTGGACCTGTATCTTTGGGTGACATTTCTTAGGCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860812 lncRNA downstream 74 42370814 ~ 42373916 (-) True G1626154
TU1860759 lncRNA downstream 36846 42336425 ~ 42337144 (-) True LOC110497897
TU1860770 lncRNA downstream 106862 42266920 ~ 42267128 (-) True G1626113
TU1860769 lncRNA downstream 107130 42266369 ~ 42266860 (-) True G1626112
TU1860768 lncRNA downstream 109208 42264571 ~ 42264782 (-) True G1626111
TU1860816 lncRNA upstream 1879 42377039 ~ 42377273 (-) True G1626158
TU1860827 lncRNA upstream 3494 42378654 ~ 42380435 (-) True G1626160
TU1860863 lncRNA upstream 70453 42445613 ~ 42448304 (-) True G1626190
TU1860880 lncRNA upstream 100958 42476118 ~ 42479938 (-) True LOC110498355
TU1860886 lncRNA upstream 111562 42486722 ~ 42486974 (-) True G1626212
XM_036954854.1 mRNA downstream 34168 42319096 ~ 42339822 (-) False LOC110497897
XM_036954856.1 mRNA downstream 34615 42319938 ~ 42339375 (-) False LOC110497897
XR_005037740.1 mRNA downstream 34615 42320293 ~ 42339375 (-) False LOC110497897
XM_036954855.1 mRNA downstream 34617 42319096 ~ 42339373 (-) False LOC110497897
XM_021574345.2 mRNA downstream 160971 42190271 ~ 42213019 (-) True LOC110497894
XM_021574355.2 mRNA upstream 24756 42399916 ~ 42414821 (-) True LOC110497901
XM_021574357.2 mRNA upstream 56824 42431984 ~ 42444254 (-) False LOC110497902
XM_021574356.2 mRNA upstream 56824 42431984 ~ 42444255 (-) False LOC110497902
XM_036954862.1 mRNA upstream 56824 42431984 ~ 42444258 (-) True LOC110497902
XR_002469740.2 mRNA upstream 73217 42448377 ~ 42451017 (-) True LOC110497906
TU1860762 other downstream 118193 42255235 ~ 42255797 (-) True G1626105
TU1859988 other downstream 523557 41846255 ~ 41850433 (-) True G1625428
TU1859580 other downstream 1179231 41194433 ~ 41194759 (-) True G1625066
TU1859566 other downstream 1211578 41144107 ~ 41162412 (-) True LOC110497865
TU1859437 other downstream 1293891 41069763 ~ 41080099 (-) True LOC110497863
TU1860882 other upstream 90665 42465825 ~ 42470702 (-) False LOC110498355
TU1860906 other upstream 265289 42640449 ~ 42641273 (-) True G1626232
TU1861008 other upstream 384134 42759294 ~ 42838434 (-) True G1626324
TU1861812 other upstream 1033567 43408727 ~ 43409109 (-) True G1627068
TU1865759 other upstream 3628605 46003765 ~ 46005877 (-) False LOC110498001

Expression Profile