RNA id: XM_036954859.1


Basic Information

Item Value
RNA id XM_036954859.1
length 1905
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110497900
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42388876 ~ 42398844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAGTGCGGTTCCTTGTTGTGATTGGTTAAGCAGTACAGGAAGTACCTGCCTCGGTTACATATTTTTTTTCGCCTTTGttacatatatataaatatacaacaTGGCTGGATTATAGAATGGCCACCGCTGCGAATAGGACATATGCAAGGCGAGTTTAGTCCTGATTAAGAACATCCCAACAATACAGTTGGAGTTGTTTTAGGGTTAGACGAGTCCCACGTTACGTTGTTTTAAAGATGCATAGTCTCACTAAAGCAACGCTGGTTTTAAATGGAATTGGGCGGCGGTGTGTTGCTGTGAATCGTTTTTCAGGAGCAAAAATCATTTGCAGGGGACTCGCGTGTGCAGCAGAACATGGGGAACATGAAATGAGCTTTATGATGTCATTATATCTGGAGGAGGAATGGTTGGGACCGCTATGGCTTGGTCTTTAGGCACGGATCCAAGCTTGGAGGGGAAGAAGATTCTGCTGCTTGAGGCAGGCAACAAAAAGGTGATGGACAAGATCCCAGACGCCTATAGTACCAGAGTCAGCTCCATCAGCCCGGGCTCTGCCAACCTCCTCAGTGgTGTTGGAGCATGGAATCACATTATGAACATGAGATGTAAAAGCCCTATCAGAAGATGCAAGTCCGTTTTTGGAAACTCCACTCTACCACAAGCACTAAAgGTTTGGGATGCCTGCTCAGATGCCCTGATTACATTCGATAAGGAGAACCTGCAGGACGAGATGGCATACATTGTGGAGAACGACATCATTGTGGCAGCCCTAACAAAACAGCTGGAGAATCTGTCTGATCAGGTGAAGGTCCAGTACAAAACCAAGGTGGTGATGTCTCACCAGGTAGCTGAATCCATCCCCTGGGTTCAGGTCACCCTGGCCAATGGACAGACATTTCAAACCAAACTACTGATTGGAGCAGATGGGCCAAATTTGATGGTGAGGCAGGAGGCGGGGATACCCACGGTCAAGTGGAATTACGACCAATCAGCTGTTGTGGCTGTCCTGCATCTTTGTCGGACACAGAGAGCTCTTTGGTGTGGTCGACTAGCCACCGCCTTGCTGAGGAGCTACTGCAGCTAGTTGAGGAGTGCTTTGTGGACACCATCAACTCTGCCTTTCCCCCTTCTCTGTCGGTCTATTCCTCTACCCTCTGTtactgcctctctttctctgtctcttcctttctggcttgatctcttcctctgtctctcttcctctctccctttgtgtcttcgtgtctctctctatctccctctatctgtgTCGTCTCTGTCTGCCAGTGGCGGGGCAAGAATCGGCCCAAAAAGCTGGGTCATGTTCCTCCTGGGCATGGGCCACGCATCAGAGTACATCAGGCACCGGGTGGCCCTCATCGGGGGCCGTGCAGGGGCCATGCAGCATCTGTTGGAATATGAGGCGTAACGGCAGCGACACAACCTGCCGATGATGGCCGCCATCGACCTGATGAAACGACTCTACTCAACTAACGCTGCCCATGTGGTTCTCTTACGCACCTTCGGTCTGCAAGCCACCAACACACTACCAGCCATAAAAGAGTAGATCATGGCGTTTGCAAGCGAGTGACACGTACACTGGTCCTGAAGTGGCAGTTTGACGGGACTCCAAAGATGATATGCCACTGTGACTTTGTGAATGGAATGTAAAGTGTAAATTAATAAAGTTATATATTATGCTCTGTTATTACATGAACATCGCTATACCTGCATGTCTTTCTTTGTGTGTTGATGATTTTGGAAACTTCCAAGCATCATTCTGTATCAGTTTCACAATCTGTTGGAATTTTTATGACAGAACATTTGTTTcagaaaacatgtatttaaaatgttttgcaaatgtattgagaATGAAATGCATAAATATataatttacttaagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860291 lncRNA upstream 13703 42373984 ~ 42375173 (+) False LOC110497898
TU1860292 lncRNA upstream 14048 42373984 ~ 42374828 (+) True LOC110497898
TU1860360 lncRNA upstream 51163 42337498 ~ 42337713 (+) True G1625761
TU1860314 lncRNA upstream 121918 42266754 ~ 42266958 (+) True G1625718
TU1860310 lncRNA upstream 132839 42255779 ~ 42256037 (+) True G1625714
TU1860432 lncRNA downstream 76196 42475040 ~ 42475248 (+) True G1625822
TU1860433 lncRNA downstream 76688 42475532 ~ 42475793 (+) True G1625823
TU1860421 lncRNA downstream 96809 42495653 ~ 42497282 (+) True G1625813
TU1860439 lncRNA downstream 99111 42497955 ~ 42498451 (+) True G1625828
TU1860516 lncRNA downstream 190458 42589302 ~ 42589684 (+) True G1625888
XM_036954857.1 mRNA upstream 13690 42340967 ~ 42375186 (+) False LOC110497898
XM_036954858.1 mRNA upstream 13690 42352010 ~ 42375186 (+) False LOC110497898
XM_036954851.1 mRNA upstream 88353 42277295 ~ 42300523 (+) False LOC110497896
XM_021574347.2 mRNA upstream 88353 42277299 ~ 42300523 (+) False LOC110497896
XM_036954852.1 mRNA upstream 88353 42288033 ~ 42300523 (+) True LOC110497896
XM_021574359.2 mRNA downstream 22909 42421753 ~ 42431863 (+) False LOC110497904
XM_021574360.2 mRNA downstream 22909 42421753 ~ 42431912 (+) False LOC110497904
XM_021574358.2 mRNA downstream 22910 42421754 ~ 42431895 (+) True LOC110497904
XM_021574362.2 mRNA downstream 45595 42444439 ~ 42448291 (+) False gstz1
XM_021574364.2 mRNA downstream 45633 42444477 ~ 42448291 (+) True gstz1
TU1860306 other upstream 137305 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 351758 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 352932 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 359370 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 378546 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 912996 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 1415882 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 1415914 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 1415914 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 2015478 44414322 ~ 44448672 (+) True G1628073

Expression Profile