RNA id: XM_021574380.2


Basic Information

Item Value
RNA id XM_021574380.2
length 2718
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110497912
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42564318 ~ 42570994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGCTAAACTAGTATTTTAGCTCTGCTAGCCAGCTCCAGGCATGAATCCAATTTAGCTAATGATAATATCTATCAGTACTATGCTTGCAAAGTATTCTTTGACATTTTCTGTATCATTGCCTATTCCTCATTACTGTATTGCCAGAGATACTCTGCCGTTGCTTGCTAGCTATCTGTTGTTTTATTAGcacattgttagctagctagctattggtGGCATAAAAAACAAGAACTTGTTAGCTAGAGGGCTATCATCATATCTGGCAAGTTTTGACCTTATTGTGACCCACTTTCAATTTTCACTATCACTATTTAATCTCACCTTTAGTTAATCTAGCTTCTCTTAACTCCAATTGTCTTGAAATGTGCTTGCTATAGCCTAGCATAATTTTTGCATCAAATCTGTCTTCACCTCTTATCTCATCATTTCACACACTGCTGTCTTAAAAGGAACCTGACTCCTCATCACATATTTCTGAGGTAACCTCTTCCTGCTGTGCTCCTTTTATTCTGTGTCTCTTTACATGCTGCATCTAAACCTGGCATGTTTGGACATGTTGAAGTACAAATAGAACGGGCTGCATGGAGTCTGAAGACCCGTgctctgacagagatggtgtacaTTGATGAGGTGGAGGTGGACCAGGAGGGGATCGCTGAGATGATGCTGGATGAAAGCTCCATTGCCCAGGTTGCTCGCCCTGGGACATCACTGAGGCGTCCTGAAACAAGCCATGGAGGTGGACCTACTCCAGCTATCAGGCCCATTACCCAATCGGGACGACCAATCACAGGGTTTGTGAGGCCCAGTACCCAGTCTGGCAGACCAGGGACAATGGAACAGGCCATTAAGACCCCGCGCACAGCACACACTGCCCGCCCTGTCACTGGTGCATCTGGCAGATTTGTCCGGCTGGGAACAGCCTCCATGTTAACCAATCCTGAGGGGCCATTTATAAATTTGTCAAGACTCAACTTGGCTAAATATGCCCAGAAGCCAAATTTATCCAAGACCTTGTTTGAGTACATCTTCCATCATGaaaatgatgtaaaaaatGCTTTAGACCTGGCTGCTCTGGCCACTGAGAATGCTCAGTTTAAAGACTGGTGGTGGAAAGTCCAGCTGGGGAAGTGCTACTACAGACTTGGTTTACACCGGGAATCAGAAAAACAGTTCCGATCTGCTCTCAATCATCAGGAGGTGGTGGACACATACCTCTATCTGGCCAAGGTGTATCAGCGGCTTGATCAACCTATAACTGCACTGAACCTCTTCAAGCAAGGTCTGGACCACTTCCCTGGGGAGGTCACTCTCTTAACAGGAATTGCTCGCATTCACGAGGAGATGAATAACATCACCTCAGCCACAGAGTACTACAAAGATGTCCTGAAGCAGGACAACACTCACGTTGAGGCTATCGCCTGCATAGGCAGCAATCACTTCTACACGGACCAGCCTGAGATCGCCTTGCGCTTTTACCGACGGCTGTTGCAGATGGGGGTATATAATTGCCAGCTGTACAACAACCTGGGATTGTGCTGCTTTTATGCCCAGCAGTATGATATGACCCTGTCCTCCTTCGAGAGGGCTCTGGCCCTGGTGGCCAATGATGAGGAGCAGGCTGACGTCTGGTACAACATTGGACACGTGGCCgtgGGAATAGGAGACCTGACTCTGGCATCCCAGTGTTTTAAACTGGCCTTGGCCTTCAACAACGACCATGCTGAGGCCTATAATAACCTGGCCGTGCTGGAGTTACGCAAGGGACACATTGAGCAGTCCAAAGCTTTCCTCCAGACCGCTGCATCAATTGCCCCTCACATGTATGAGCCACACTTTAACTACTCCACTCTGTCAGATAAGATTGGAGATCTGCAGAGTAGCTACACGGCAGCCCAGAGGTCAGAGGATGCCTTCCCTGAGCATGTAGATACCCAGCAGATCCTGAAACACCTCCGCCAGCACTTTGCTGTGCTGTGACCTACTGACCGACACACCTGACTTGACAGTCCAAACTTCCTGTGTGATAACTTACTTAGTTGTCGCAGAGTGCTGCTATTGAACAACAGTGACTGGCCTCCTCATGTTCTGGTTAGACATCATCACAATCTACAGAAAAACATTCTGCTGTTAGATGATGGTGACAATACACAGGCTAAATGATACAAAGAGCAATTTGGCTTGGGCAACTCACTGCACAGACATTATTATAAAACAGCTATTTAAAACTGCCTGGCCCAATGCAGGTCTTATTAGTTGTATTTTAAGTGTTTTATTTGCAGCCAAGATTGGTTTTGGCATTCGTTTTTCTCATCAACTGTTGATTCACATACATGTGTAATAGTATTTAAGGTACTTTTAAGCACCGATAGTGAATGTACATAATAAAGTATGAACATGGAAGAAAAACATATTTACTATAGTACATATTTATACTGCTCTTTTTTATAGTGTATTCAGATGTAAACCTGGGATGTATTTTGGTATTAACATTACTCTTGTCATAATTTGTAGTCTGTCTTGTTTGTAAGGAGTAAACtatataaacttttttttttttaaagatgcagAACTAATTATGTTTAACTTTACAGTATGACAATTTCTTTTATCAGATAAAATGTTATGTACAACTTAAAAGTTACATTTGATTCCAATGCTTATTATTTTGAATGTATGCATTTACTTATTGAAATAATGGCAATTTTATAGTAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060026 convergent extension biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16781 TTC8, BBS8; tetratricopeptide repeat protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860439 lncRNA upstream 66128 42497955 ~ 42498451 (+) True G1625828
TU1860421 lncRNA upstream 67297 42495653 ~ 42497282 (+) True G1625813
TU1860433 lncRNA upstream 88786 42475532 ~ 42475793 (+) True G1625823
TU1860432 lncRNA upstream 89331 42475040 ~ 42475248 (+) True G1625822
TU1860292 lncRNA upstream 189751 42373984 ~ 42374828 (+) True LOC110497898
TU1860516 lncRNA downstream 18308 42589302 ~ 42589684 (+) True G1625888
TU1860552 lncRNA downstream 67537 42638531 ~ 42638756 (+) True G1625915
TU1860558 lncRNA downstream 70983 42641977 ~ 42642356 (+) True G1625918
TU1860559 lncRNA downstream 71584 42642578 ~ 42643263 (+) True G1625919
TU1860563 lncRNA downstream 78851 42649845 ~ 42650111 (+) True G1625923
XM_021574375.2 mRNA upstream 70508 42492218 ~ 42494071 (+) False isca2
XM_021574376.2 mRNA upstream 70514 42492220 ~ 42494065 (+) True isca2
XM_021574369.2 mRNA upstream 79848 42481002 ~ 42484731 (+) False LOC110497909
XM_021574371.2 mRNA upstream 79848 42481170 ~ 42484731 (+) False LOC110497909
XM_036954864.1 mRNA upstream 79848 42481949 ~ 42484731 (+) True LOC110497909
XM_021574382.2 mRNA downstream 6790 42577784 ~ 42588877 (+) True LOC110497914
XM_036954868.1 mRNA downstream 39087 42610081 ~ 42619496 (+) False LOC110497916
XM_021574385.2 mRNA downstream 45570 42616564 ~ 42619496 (+) False LOC110497916
XM_021574384.2 mRNA downstream 45580 42616574 ~ 42619496 (+) True LOC110497916
XM_021574387.2 mRNA downstream 49576 42620570 ~ 42628100 (+) True LOC110497917
TU1860306 other upstream 313008 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 527461 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 528635 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 535073 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 554249 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 740846 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 1243732 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 1243764 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 1243764 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 1843328 44414322 ~ 44448672 (+) True G1628073

Expression Profile